GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002664-TA|BGIBMGA002664-PA|IPR000618|Insect cuticle
protein
         (197 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    35   0.007
SPAC1556.03 |azr1||serine/threonine protein phosphatase Azr1|Sch...    29   0.61 
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    28   1.1  
SPAC2F3.04c |rim1||mitochondrial single-stranded DNA binding pro...    28   1.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   1.4  
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.4  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    27   1.9  
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    27   2.5  
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    26   4.3  
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom...    26   4.3  
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    25   5.7  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    25   5.7  
SPAC3H8.03 |||mitochondrial ribosomal protein subunit Img2|Schiz...    25   7.5  
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb...    25   7.5  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    25   7.5  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    25   9.9  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.9  

>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 35.1 bits (77), Expect = 0.007
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 6/88 (6%)

Query: 34  DSGKYIPTDEGKYIHIPNPYIHIDNPYDGGF--GPYAHDYEPYVGEATV----QDQYRLI 87
           +SG Y        + + N   ++D   + G+    +AH +EP V +  V    +D+  ++
Sbjct: 57  ESGYYEKAIRNGQVKVNNQIGNVDTLIENGYIVSHHAHRHEPPVSDQPVGIVHEDESYVV 116

Query: 88  LTPPKDIPFYKDGYYKNNGIKIIKQKHN 115
           +  P  +P +  G Y +N +  I  K N
Sbjct: 117 IDKPAGVPVHPTGRYNHNTVLHILMKEN 144


>SPAC1556.03 |azr1||serine/threonine protein phosphatase
           Azr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 28.7 bits (61), Expect = 0.61
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 24  DGKWHPYHYGDSGKYIPTDEGKYIHIPNPYIHIDNPYDGGFGP----YAHDYEPYVGEAT 79
           +GK H  + GDSG  I  +   +   P   +  + PY     P     A +  P +G+AT
Sbjct: 139 NGKLHSLNLGDSGFLILRNGAIHYASPAQVLQFNMPYQLAIYPRNYRSAENIGPKMGQAT 198

Query: 80  VQD 82
           V D
Sbjct: 199 VHD 201


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 120 KYDFDFETENKIRAEEKAVLKNANSIDEG 148
           KY F+ ETEN+++ ++  +L     IDEG
Sbjct: 429 KYSFEPETENELKLKKGDLLLVLKEIDEG 457


>SPAC2F3.04c |rim1||mitochondrial single-stranded DNA binding
           protein Rim1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 104 NNGIKIIKQKHN-YDEDKYDFD-----FETENKIRAEEKAVLKNANSIDEGIASKGFYEY 157
           NNG  +    H+ Y  D Y+FD          ++  E  AV ++  + +EG  +K    +
Sbjct: 57  NNGKDVAPTFHSVYVFDSYNFDRLQTILRKGTRVYVEADAVWRSVPAGNEGSQAKMSLRH 116

Query: 158 IGPDGFMYRVDYTADENG 175
           +  D   Y  +   DE+G
Sbjct: 117 VSADVLFYPRNKNGDESG 134


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 29  PYHYGDSGKYIPTDEGKYIHIPNPYIHIDNPYDGGFG 65
           P    D G++   D+  Y+ IP+P++ +   Y GG G
Sbjct: 264 PNRVDDHGRFHFKDDS-YLPIPHPFLGVPKVYRGGSG 299


>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 386

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 87  ILTPPKDIPFYKDGYYKNNGIKIIKQKHNYDE----DKYDFDFETENKIRAEEKAVLKNA 142
           +L+P +  P    G Y +NG+   +++   D+    D++++ + T      +E  +L   
Sbjct: 278 VLSPREQTPALFTGQYPDNGVYYEEEEEEEDDNDLFDEHEYGYGTLPPFVFDEDQMLDGG 337

Query: 143 NSIDE 147
            S DE
Sbjct: 338 ESTDE 342


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 36  GKYIPTDEGKYIHIPNPYIHIDNPYDGGFGPY 67
           G  +PT  G Y+  PN Y  +  PY+  + PY
Sbjct: 710 GSSMPTANGFYV--PNTYSPVPFPYNTSYPPY 739


>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 142 ANSIDEGIASKGFYEYIGPDGFMYRVDYTADENGFRPKVKRL 183
           A+  D G        +  PDG    +++  D+NG + KV R+
Sbjct: 10  ADDEDYGTGLPSIQTFDNPDGTKTMIEFRIDDNGKKVKVTRV 51


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 93  DIPFYKDGYYKNNGIKIIKQKHNYDEDKYDFD-FETENKIRAEE 135
           D PF+KD     N  K  K KH   ED       E EN +R +E
Sbjct: 513 DDPFFKDKDASRNNKKNKKGKHTQIEDPTAASKEELENLVREDE 556


>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 113 KHNYDEDKYDFDFETENKIRAEE 135
           +H YD D  +F+FE +N +   E
Sbjct: 73  EHTYDIDNKNFNFEPKNSVNKTE 95


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 101 YYKNNGIKIIKQKHNYDEDKY---DFDFETENKIRAEEKAVLK 140
           Y K  G +  KQ +  DE      DFDF+T + + AEE  +LK
Sbjct: 566 YIKRQGTQN-KQLNCRDESTVIPSDFDFDTLHSVSAEELMLLK 607


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 7/57 (12%)

Query: 58  NPYD---GGFGPYAHDYEPYVGEATVQDQYRLILTPPKDI----PFYKDGYYKNNGI 107
           NPY    GG  PYA  Y+  + + + +D + +  +P KD      F  DG   + GI
Sbjct: 207 NPYYFAIGGTHPYAFLYDRRMVKKSFRDDWTMNTSPEKDCRCVRKFSPDGSCNSQGI 263


>SPAC3H8.03 |||mitochondrial ribosomal protein subunit
           Img2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 83  QYRLILTPPKDIPFYKDGYYKNNGIKII 110
           ++ +  TP K++P Y D  YK  G KI+
Sbjct: 24  RFHVSRTPSKNLPVYLD--YKQRGTKIL 49


>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 415

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/46 (21%), Positives = 22/46 (47%)

Query: 119 DKYDFDFETENKIRAEEKAVLKNANSIDEGIASKGFYEYIGPDGFM 164
           D ++ DF  ++K+  EE+++     SI +         +  P+G +
Sbjct: 71  DTFEEDFAYQDKVEIEERSIRSTPKSIGDDDLENREGSFDAPEGIL 116


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/47 (23%), Positives = 20/47 (42%)

Query: 118 EDKYDFDFETENKIRAEEKAVLKNANSIDEGIASKGFYEYIGPDGFM 164
           ED  D D+E  +        V    NS+   +  K  ++Y  P+ ++
Sbjct: 932 EDAMDIDYENTSSPNTASNPVWSIDNSVITELLPKQIWDYFSPNFYL 978


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 116 YDEDKYDFDFETENK 130
           YD + YD DF+TE K
Sbjct: 539 YDLEFYDLDFDTEKK 553


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 109 IIKQKHNYDEDKYDFDFETENKIRAEEKAVLKN 141
           I+K+K N  +DK   +      I   +K VLKN
Sbjct: 103 ILKEKRNILQDKTSVNVNVNKLIPIPKKKVLKN 135


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.141    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,160,026
Number of Sequences: 5004
Number of extensions: 59036
Number of successful extensions: 121
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 111
Number of HSP's gapped (non-prelim): 17
length of query: 197
length of database: 2,362,478
effective HSP length: 69
effective length of query: 128
effective length of database: 2,017,202
effective search space: 258201856
effective search space used: 258201856
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)