GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002664-TA|BGIBMGA002664-PA|IPR000618|Insect cuticle
protein
         (197 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0210 + 14324539-14324609,14324735-14325740,14325838-143273...    32   0.27 
03_04_0013 + 16436438-16436536,16437257-16437742,16437791-164378...    31   0.47 
01_01_1003 - 7939376-7939414,7939464-7939568,7939757-7939872,794...    29   2.5  
01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-70...    29   2.5  
01_01_0089 - 699533-699643,699738-700046,700134-700220,700298-70...    29   2.5  
07_01_0249 - 1844894-1845363,1845557-1848158                           29   3.3  
02_01_0590 + 4376785-4377009,4378153-4378407,4378514-4378641,437...    27   7.7  

>08_02_0210 +
           14324539-14324609,14324735-14325740,14325838-14327390,
           14327473-14327601,14328345-14328510
          Length = 974

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 11/86 (12%)

Query: 108 KIIKQKHNYDEDKYDFDFETENKIRAEEKAVLKNANSIDEGIASKGFYEYIGP--DGFMY 165
           K ++Q     E+ Y F+F+ E +++     V  +    D+GI    F+    P  DGFM 
Sbjct: 427 KAVEQIFGSWEESYLFNFKAEVELKMPGSVVEIDVQEDDDGIYFCRFFCAFKPCIDGFM- 485

Query: 166 RVDYTADENGFRPKVKRLETPYSGKW 191
                   NG RP +    T ++GKW
Sbjct: 486 --------NGCRPYLSIDSTAFNGKW 503


>03_04_0013 +
           16436438-16436536,16437257-16437742,16437791-16437826,
           16437835-16438323,16438951-16439622
          Length = 593

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 78  ATVQDQYRLILTPPKDIPFYKDG-YYKNNGIKIIKQKHNYDEDKYDFDFETENKIRAEEK 136
           A + ++Y+++  P   I   K G  Y  +G++++   H Y  + Y F  E  N+++ +EK
Sbjct: 112 AKLNERYKVMGIPHLVILDAKSGEIYTEDGVELV---HEYGTEAYPFTTERINELKEQEK 168

Query: 137 AVLKN 141
           A   N
Sbjct: 169 AAKDN 173


>01_01_1003 -
           7939376-7939414,7939464-7939568,7939757-7939872,
           7941494-7942760
          Length = 508

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 22/51 (43%), Positives = 25/51 (49%), Gaps = 6/51 (11%)

Query: 148 GIASKGFYEYIGPDGFMYR-VD-YTADENGFRPKVK--RLETPYSGKWILE 194
           G+A K  Y Y+G      R VD YTA   G  PKV    L  P S +W LE
Sbjct: 287 GVADK--YRYVGVSAGKLRFVDTYTAPRRGVPPKVSVWTLADPDSTEWTLE 335


>01_01_0090 +
           706340-707296,707370-707513,707596-707682,707771-708105,
           708462-708702,708783-708857,708932-709017,709451-709523,
           709637-709961,710092-711750,711938-713322
          Length = 1788

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/47 (23%), Positives = 29/47 (61%)

Query: 101 YYKNNGIKIIKQKHNYDEDKYDFDFETENKIRAEEKAVLKNANSIDE 147
           Y  ++ IKI+KQ H+   + Y+   +T++++ ++ ++++     +DE
Sbjct: 468 YLHSDAIKIVKQNHSSIVEMYEKIMKTQSQMPSKMESLVDRYKDLDE 514


>01_01_0089 -
           699533-699643,699738-700046,700134-700220,700298-700469,
           700547-701373,701487-701559,701993-702078,702153-702227,
           702308-702548,702905-703239,703328-703414,703497-703640,
           703714-704670
          Length = 1167

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/47 (23%), Positives = 29/47 (61%)

Query: 101 YYKNNGIKIIKQKHNYDEDKYDFDFETENKIRAEEKAVLKNANSIDE 147
           Y  ++ IKI+KQ H+   + Y+   +T++++ ++ ++++     +DE
Sbjct: 468 YLHSDAIKIVKQNHSSIVEMYEKIMKTQSQMPSKMESLVDRYKDLDE 514


>07_01_0249 - 1844894-1845363,1845557-1848158
          Length = 1023

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 7/54 (12%)

Query: 19  GVPVEDGKWHPYHY----GD--SGKYIPTDEGKYIHIPNPYIHIDNPYDGGFGP 66
           G+P E G+W    Y    G+  SGK IP + G    +   YI   N Y GG  P
Sbjct: 181 GIPPEYGRWGRLQYLAVSGNELSGK-IPPELGNLTSLRELYIGYFNSYSGGIPP 233


>02_01_0590 +
           4376785-4377009,4378153-4378407,4378514-4378641,
           4378738-4378779,4378875-4378956,4379035-4379103,
           4379180-4379350,4379430-4379495,4379777-4379845,
           4379928-4380056,4380845-4380881,4380906-4380997,
           4381541-4381602,4381855-4381918
          Length = 496

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/65 (24%), Positives = 32/65 (49%)

Query: 93  DIPFYKDGYYKNNGIKIIKQKHNYDEDKYDFDFETENKIRAEEKAVLKNANSIDEGIASK 152
           ++PF+K   +++N +K +  K     D+     E E K++AE+K + K      +    +
Sbjct: 292 ELPFFKKVKFEDNVLKSVLNKLPSLGDRMQSIQENEAKLQAEKKPLDKCKEKASQDEYMR 351

Query: 153 GFYEY 157
           G  E+
Sbjct: 352 GVSEW 356


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.141    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,011,767
Number of Sequences: 37544
Number of extensions: 348184
Number of successful extensions: 618
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 615
Number of HSP's gapped (non-prelim): 7
length of query: 197
length of database: 14,793,348
effective HSP length: 78
effective length of query: 119
effective length of database: 11,864,916
effective search space: 1411925004
effective search space used: 1411925004
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)