GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002663-TA|BGIBMGA002663-PA|IPR004117|Olfactory receptor,
Drosophila
         (252 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    29   0.86 
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    28   1.1  
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    27   2.0  
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    27   3.5  
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb...    27   3.5  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    26   4.6  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    26   4.6  
SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces pom...    25   8.0  

>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 23  KSAPSKYNMAYTALYLSASLFVYDIFLTLNLIHTPRKLETLLRETMFYFNHLVAMTKILK 82
           K     ++++Y  L L +S F+Y   L L L  T  KLE L+R+ +  +         LK
Sbjct: 167 KETSQSHSISYPRL-LYSSAFIYVACLLLRLPLTIHKLEVLIRKNIIPYYRAYKQIP-LK 224

Query: 83  MFIRRKK 89
           +F R +K
Sbjct: 225 IFKRLQK 231


>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/77 (24%), Positives = 32/77 (41%)

Query: 57  PRKLETLLRETMFYFNHLVAMTKILKMFIRRKKILVIFDLLDCEEFKPSDEDSQEIMKRK 116
           P KL  +    +  FN+ +   K+          + +F  L C ++  SDED     +  
Sbjct: 142 PSKLVIVANFDLKAFNYRIMYQKLYDSSEVLDDRIELFSALTCRKYNISDEDLANPSELT 201

Query: 117 NEFYYIYWRIVAVTSNL 133
            E   +  RIV  ++NL
Sbjct: 202 QEPVVVVGRIVVESTNL 218


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query: 102 FKPSDEDSQEIMKRKNEFYYIYWRIVAVTSNLSCFMQVVGP 142
           F P+ E  QE+ K  N++ Y    +V +  NL+  ++ V P
Sbjct: 379 FAPTPESKQELEKLGNDYDYFKKNVVDLHLNLAQVLRRVSP 419


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/54 (20%), Positives = 28/54 (51%)

Query: 42  LFVYDIFLTLNLIHTPRKLETLLRETMFYFNHLVAMTKILKMFIRRKKILVIFD 95
           L + ++ +    +HT  ++  +  + +  +N  V M +   +F +RK + V+F+
Sbjct: 548 LDIKELSIRAEKLHTTNEIIGVWNQWVVSYNRKVGMQQNADLFFKRKTLRVVFE 601


>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 178 YQSFGIYNQMVNNLNLDTFNCGMLWMAVG 206
           Y    +YN     L LDTF  G+ ++A G
Sbjct: 173 YAMGALYNHPFEGLILDTFGAGVAYLAAG 201


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/18 (61%), Positives = 13/18 (72%)

Query: 145 KMLIWKSELGLPVCKYYF 162
           K LIW+S L  PV K+YF
Sbjct: 437 KELIWRSRLTNPVNKWYF 454


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 11  NFIFWKFLGIWGKSAPSKYNMAYTALYLSASLFVY--DIFLTLNLI 54
           N +   FL +W      KY + YT      SLF Y  DI +  NL+
Sbjct: 506 NILAQMFLSLWRIHPGLKYRVLYTIFAGVNSLFSYTWDILMDWNLL 551


>SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 336

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 85  IRRKKILVIFDLLDCEEFKPSDEDSQE 111
           +R++K++ IFDL    EFK   +D  E
Sbjct: 58  MRKRKVITIFDLKIQMEFKGETKDGVE 84


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.330    0.142    0.443 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,202,221
Number of Sequences: 5004
Number of extensions: 51135
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 153
Number of HSP's gapped (non-prelim): 8
length of query: 252
length of database: 2,362,478
effective HSP length: 71
effective length of query: 181
effective length of database: 2,007,194
effective search space: 363302114
effective search space used: 363302114
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 53 (25.4 bits)