GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002663-TA|BGIBMGA002663-PA|IPR004117|Olfactory receptor,
Drosophila
         (252 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0387 - 8016399-8016575,8016661-8016788,8017073-8017214,801...    31   0.90 
02_05_1150 + 34481965-34482076,34482174-34482268,34482380-344824...    31   0.90 
10_02_0148 - 5859664-5859828,5859916-5860043,5860310-5860451,586...    29   2.7  
04_01_0024 + 344621-344830,344926-345705                               29   3.6  
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433...    28   6.3  
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           28   8.3  

>03_02_0387 -
           8016399-8016575,8016661-8016788,8017073-8017214,
           8017301-8017396,8017572-8017712,8017857-8018031,
           8018443-8018575,8018661-8018733,8018807-8018900,
           8019890-8019981,8020091-8020185,8020267-8020378
          Length = 485

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 199 GMLWMAVGQLQILKTKFVNFKLND---IENSLDLKTRDDMQTERLRKYL 244
           G+ W     L + ++  V FK ND   + N+L+  TR + + E++R+Y+
Sbjct: 203 GVHWAVQNGLHLSRSTVVYFKHNDMASLANTLEKLTRGNKRAEKIRRYI 251


>02_05_1150 +
           34481965-34482076,34482174-34482268,34482380-34482471,
           34482878-34482971,34483191-34483354,34483755-34483929,
           34484017-34484157,34484357-34484452,34484549-34484690,
           34484953-34485080,34485179-34485343
          Length = 467

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 199 GMLWMAVGQLQILKTKFVNFKLND---IENSLDLKTRDDMQTERLRKYL 244
           G+ W     LQ+ ++  V FK ND   + ++L+  T  + +TE++R+Y+
Sbjct: 189 GVHWAVQNGLQLSRSTVVYFKHNDMASLASTLEKLTHGNKRTEKIRRYI 237


>10_02_0148 -
           5859664-5859828,5859916-5860043,5860310-5860451,
           5860548-5860643,5860836-5860976,5861799-5861973,
           5862416-5862702,5862777-5862870,5863244-5863335,
           5863459-5863553,5863648-5863759
          Length = 508

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 199 GMLWMAVGQLQILKTKFVNFKLND---IENSLDLKTRDDMQTERLRKYL 244
           G+ W     LQ+ ++  V FK ND   + + L+  T  +  TE++R+Y+
Sbjct: 230 GVHWAVQNGLQLSRSTVVYFKHNDMASLASILEKLTHGNKHTEKIRRYI 278


>04_01_0024 + 344621-344830,344926-345705
          Length = 329

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/42 (30%), Positives = 25/42 (59%)

Query: 15  WKFLGIWGKSAPSKYNMAYTALYLSASLFVYDIFLTLNLIHT 56
           W+F  + G+   + + M++ A+YLS  +F+  I L +  IH+
Sbjct: 132 WRFAEMRGQYGRAWWWMSFFAVYLSQQVFLIGICLPMYAIHS 173


>07_03_0792 - 21541301-21542143,21542426-21542661,21543177-21543373,
            21543459-21544173,21544250-21544892,21545970-21546139,
            21546442-21546943
          Length = 1101

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/55 (23%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 53   LIHTPRKLETLLRETMFYFNHLVAMTKILKMFIRRKKILVIFDLLDCEEFKPSDE 107
            L+   +K+  L+++T+ YF+      + L++F+  +  L + D + C+E K + +
Sbjct: 1003 LLEEEKKMRLLVKDTVDYFHGSAGKDEGLRLFVIVRDFLAMLDKV-CKEVKEASK 1056


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 53  LIHTPRKLETLLRETMFYFNHLVAMTKILKMFIRRKKILVIFDLLDCEEFK 103
           L+   ++L +L+R T+ YF+      + L++F+  +  L I D + C E K
Sbjct: 799 LLEDEKRLRSLVRATVDYFHGSTGKDEGLRLFVVVRDFLGILDKV-CREVK 848


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.330    0.142    0.443 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,651,614
Number of Sequences: 37544
Number of extensions: 252390
Number of successful extensions: 599
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 596
Number of HSP's gapped (non-prelim): 7
length of query: 252
length of database: 14,793,348
effective HSP length: 80
effective length of query: 172
effective length of database: 11,789,828
effective search space: 2027850416
effective search space used: 2027850416
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 59 (27.9 bits)