GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002662-TA|BGIBMGA002662-PA|undefined
         (214 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    27   2.1  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    25   6.4  

>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1347

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 155  RHYVHHNVTSMNFDNPVYRKTTEDQ-----FALEKNGYAPGSKLYPSTVGEEAQEPLNKP 209
            R Y+    +S  +D+  YR   ED+       + ++G  P S    S   E+A+E   KP
Sbjct: 966  REYLFSQESSQLWDDSPYRSIFEDRRCSTSAVILESGIVPSSNQSDSLNKEDAEEKSPKP 1025

Query: 210  N 210
            N
Sbjct: 1026 N 1026


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 55  SDKKELNNNNQQFIDLYLEDASLGRIPD-TTEKPVIESHFKYAKV 98
           +DK EL  N+ +F  L +++  L   PD   ++P   SH K+ ++
Sbjct: 636 NDKLELYFNDHEFSYLMVQENYLNTTPDRIRQEPPKMSHLKHLEL 680


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.132    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 899,091
Number of Sequences: 5004
Number of extensions: 34757
Number of successful extensions: 58
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 58
Number of HSP's gapped (non-prelim): 2
length of query: 214
length of database: 2,362,478
effective HSP length: 70
effective length of query: 144
effective length of database: 2,012,198
effective search space: 289756512
effective search space used: 289756512
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 52 (25.0 bits)