GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002662-TA|BGIBMGA002662-PA|undefined
         (214 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0265 + 20188160-20188211,20188291-20189019,20189103-201892...    28   6.6  

>01_05_0265 +
           20188160-20188211,20188291-20189019,20189103-20189231,
           20189857-20189938,20190034-20190166,20190269-20190340,
           20190478-20190573,20190651-20190764,20190838-20191050,
           20191144-20191242,20191328-20191488,20191589-20191685,
           20191828-20191989,20192068-20192148,20192242-20192320,
           20192414-20192550,20192638-20192688,20192776-20192844,
           20193583-20193700,20194142-20194197
          Length = 909

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/25 (52%), Positives = 14/25 (56%)

Query: 160 HNVTSMNFDNPVYRKTTEDQFALEK 184
           H   SM  DNP   KTTED F  +K
Sbjct: 407 HVEDSMETDNPNANKTTEDDFLRDK 431


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.312    0.132    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,146,448
Number of Sequences: 37544
Number of extensions: 179309
Number of successful extensions: 251
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 250
Number of HSP's gapped (non-prelim): 1
length of query: 214
length of database: 14,793,348
effective HSP length: 79
effective length of query: 135
effective length of database: 11,827,372
effective search space: 1596695220
effective search space used: 1596695220
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 58 (27.5 bits)