GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002662-TA|BGIBMGA002662-PA|undefined
         (214 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40030-4|AAS80338.1|  909|Caenorhabditis elegans Hypothetical pr...    33   0.12 
U40030-3|AAS80339.1|  911|Caenorhabditis elegans Hypothetical pr...    33   0.12 

>U40030-4|AAS80338.1|  909|Caenorhabditis elegans Hypothetical
           protein T13C2.6a protein.
          Length = 909

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 11/16 (68%), Positives = 16/16 (100%)

Query: 163 TSMNFDNPVYRKTTED 178
           T++NFDNP+YR+TTE+
Sbjct: 851 TALNFDNPIYRRTTEE 866


>U40030-3|AAS80339.1|  911|Caenorhabditis elegans Hypothetical
           protein T13C2.6b protein.
          Length = 911

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 11/16 (68%), Positives = 16/16 (100%)

Query: 163 TSMNFDNPVYRKTTED 178
           T++NFDNP+YR+TTE+
Sbjct: 853 TALNFDNPIYRRTTEE 868


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.312    0.132    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,803,880
Number of Sequences: 27539
Number of extensions: 185149
Number of successful extensions: 330
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 328
Number of HSP's gapped (non-prelim): 2
length of query: 214
length of database: 12,573,161
effective HSP length: 78
effective length of query: 136
effective length of database: 10,425,119
effective search space: 1417816184
effective search space used: 1417816184
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 58 (27.5 bits)