GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002661-TA|BGIBMGA002661-PA|IPR000152|Aspartic acid and
asparagine hydroxylation site, IPR013032|EGF-like region,
IPR000742|EGF-like, type 3, IPR001881|EGF-like calcium-binding,
IPR002172|Low density lipoprotein-receptor, class A,
IPR000033|Low-density lipoprotein receptor, YWTD repeat,
IPR002016|Haem peroxidase, plant/fungal/bacterial, IPR008197|Whey
acidic protein, core region, IPR006210|EGF, IPR006209|EGF-like,
IPR013091|EGF calcium-binding, IPR011061|Antihaemostatic protein
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    43   1e-04
SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|...    31   0.45 
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...    29   3.2  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    27   7.4  

>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 71  FECLSDGLCIPRSWRCDATADCPDGSDEHQCEVEACGPEEFTCR--GKPGECVPLTWMCD 128
           ++CL     I  +   D   DCPDGSDE      AC   +F C+  G     +P   + D
Sbjct: 46  WKCLGSDKLISFNQVNDDYCDCPDGSDEP--GTSACHNGKFFCKNTGYISSYIPSNRVDD 103

Query: 129 DNPDCSDGSDEK--ACNETC 146
              DC DGSDE    C  TC
Sbjct: 104 TVCDCCDGSDESLIKCPNTC 123



 Score = 31.9 bits (69), Expect = 0.34
 Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 8/63 (12%)

Query: 297 DCPDGSDEYN---CTRQKTICDKRTEFDCGGGMCIPLSKVCDKHVDCPNFEDEPRDRCGE 353
           DCPDGSDE     C   K  C K T +       IP ++V D   DC +  DE   +C  
Sbjct: 66  DCPDGSDEPGTSACHNGKFFC-KNTGYISS---YIPSNRVDDTVCDCCDGSDESLIKC-P 120

Query: 354 NEC 356
           N C
Sbjct: 121 NTC 123



 Score = 28.7 bits (61), Expect = 3.2
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 6/72 (8%)

Query: 315 DKRTEFDC-GGGMCIPLSKVCDKHVDCPNFEDEP-RDRC--GENECEKNNGGCSQRCVDT 370
           D +  + C G    I  ++V D + DCP+  DEP    C  G+  C KN G  S      
Sbjct: 41  DAKGNWKCLGSDKLISFNQVNDDYCDCPDGSDEPGTSACHNGKFFC-KNTGYISSYIPSN 99

Query: 371 PI-GYYCDCEKG 381
            +    CDC  G
Sbjct: 100 RVDDTVCDCCDG 111



 Score = 27.5 bits (58), Expect = 7.4
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 269 GNVTCRLDQFQCKD----HSCIPGALYCNGVKDCPDGSDEYNCTRQKTICDKRTEF 320
           G   C   +F CK+     S IP     + V DC DGSDE       T   K  E+
Sbjct: 75  GTSACHNGKFFCKNTGYISSYIPSNRVDDTVCDCCDGSDESLIKCPNTCAQKAREY 130


>SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 383 KLIDNRTCEDIDECADPGSCSQICINEKGTFKCECHTGYARDPRDRTRCKATEGHPSLLF 442
           K  + R C  IDE   P  C Q  +N  G  K   +    +DP  R   ++  G P +  
Sbjct: 84  KSFERRRCGHIDEALSPSECIQSVVNINGRNK-HRYVVATQDPELRQALRSVPGVPLIYM 142

Query: 443 AR 444
            R
Sbjct: 143 KR 144


>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 494 PIDEGTQRTVVIGEQLITSDGLAVDWVYNHLYWTDT 529
           PI  G QR ++IG++      +A+D + NH  W ++
Sbjct: 186 PIGRG-QRELIIGDRQTGKTAIALDTILNHKRWNNS 220


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 9/99 (9%)

Query: 632 RLILHST--EVLRHPFSITTFED-WVYWTDWDKTAVYRANKFNGKDVEAITSTHTLQNPM 688
           R++ HST  EV    +++    D WV  T   KT V+     N + +E +   HT     
Sbjct: 268 RMLRHSTPWEVADTQWNVHAARDQWVVSTSSQKTIVWNLALPNDRAIEFMLHGHT---RA 324

Query: 689 VIHVYHPYRQPDGVNHCAAVNG-HCSHLCLPAPRFGPNS 726
           V  +    + PD +  C+  +  HC    L +PRF  NS
Sbjct: 325 VTDMNWHRQNPDVLATCSIDSSVHCWD--LRSPRFPVNS 361


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.137    0.473 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,908,699
Number of Sequences: 5004
Number of extensions: 172408
Number of successful extensions: 253
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 242
Number of HSP's gapped (non-prelim): 13
length of query: 766
length of database: 2,362,478
effective HSP length: 78
effective length of query: 688
effective length of database: 1,972,166
effective search space: 1356850208
effective search space used: 1356850208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)