Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002660-TA|BGIBMGA002660-PA|IPR001360|Glycoside
hydrolase, family 1
(523 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 29 1.2
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ... 29 1.6
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p... 29 1.6
SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac... 28 2.8
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 27 4.8
SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual 27 4.8
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 27 6.4
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo... 27 8.4
>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 570
Score = 29.5 bits (63), Expect = 1.2
Identities = 18/70 (25%), Positives = 30/70 (42%)
Query: 321 TADFFGLNHYTTYLLTMADKEVGSIPSHQNDVGIVRVQDPNWPSESSSTWLKVVPYGFRK 380
T DF H+ TY+ M + + + V I + +P+ + ST L ++ G R
Sbjct: 235 TQDFIDATHFPTYVTPMGKTAINESSPYFDGVYIGSLTEPSIKERAESTDLLLIIGGLRS 294
Query: 381 LLQWITKTYS 390
T TY+
Sbjct: 295 DFNSGTFTYA 304
>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 601
Score = 29.1 bits (62), Expect = 1.6
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 16/107 (14%)
Query: 125 INEILKYNITPMITIYHWD-LPQKLQ----------DIGGWSNAHIVD--YYTDYAKILF 171
I ++ Y+ T + T+Y W+ + + L+ D GW N H+ D Y D+ + F
Sbjct: 19 IGSVIAYSSTDLTTMYDWNQIIKPLEWGQMNFIHTTDTHGWLNGHLRDARYKADFGE--F 76
Query: 172 KNFGDRVKYWITFNEPMQTCLEGYGGTYRAPALNRHGHAEYLCTHNL 218
K+F R+K F + + L G + L+ E + T+N+
Sbjct: 77 KSFVLRMKELADFKD-VDLLLVDTGDLHDGNGLSDASDPEGIYTNNI 122
>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 29.1 bits (62), Expect = 1.6
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 15/77 (19%)
Query: 116 LGIAYYNNLINEILKYNITPMITIYHWD-LPQKLQ----------DIGGWSNAHIVD--Y 162
LG+A LI+ Y+ T + T+Y W+ + + L+ D GW H+ D Y
Sbjct: 10 LGLASLLGLISSATAYSATDLTTMYDWNQIIKPLEWGQLNFIHTTDTHGWLGGHLRDARY 69
Query: 163 YTDYAKILFKNFGDRVK 179
D+ + FK+F R+K
Sbjct: 70 KADFGE--FKSFALRMK 84
>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 28.3 bits (60), Expect = 2.8
Identities = 11/49 (22%), Positives = 25/49 (51%)
Query: 137 ITIYHWDLPQKLQDIGGWSNAHIVDYYTDYAKILFKNFGDRVKYWITFN 185
+T W +P+ +Q +GG ++++Y++ K+ + +K FN
Sbjct: 11 LTSIQWRMPEWVQSMGGLRTENVLEYFSQSPFYSHKSNNEMLKMQSQFN 59
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 27.5 bits (58), Expect = 4.8
Identities = 21/100 (21%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 4 HSFLYAEIV-NLAGGKNTNYKFPENFIFGVSTAAAQIEGAWNVDGKSESIWDHLVHKNPE 62
HS ++ I+ L +++ E F+ + + I A S S L + +
Sbjct: 576 HSLIFQRIIYRLTQSASSDNALREWFLHNIESIDQLIAQAHEFCIDSGSRVQELPLEVLD 635
Query: 63 FVKDGSNADVASDSYHL-YKRDAEMVHELGVDTYRFSVSW 101
+ + + +A S L Y+R+++ +++L +DT+ V W
Sbjct: 636 VIMEANEVILAIQSSALAYRRESQKIYKLSIDTFGEEVPW 675
>SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 413 VSYYSHYLNALLHSIHEDGSVVEGYF--AWSLMDNFEWDDGYVS 454
+S + H +LL S +D ++ W + NF +DGYV+
Sbjct: 63 ISLHVHLAQSLLRSAADDLPLISWLCDTVWKMQGNFTQEDGYVA 106
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 27.1 bits (57), Expect = 6.4
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 77 YHLYKRDAEMVHELGVDTYRFSVSWPRILPTGLTNEINELGIAYYNNL 124
Y+LY + + V+ LG D +++S PTG ++L Y N+L
Sbjct: 149 YYLYNTETKDVNMLGQDNEHWTISLAEWSPTG-----HQLSFVYNNDL 191
>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 342
Score = 26.6 bits (56), Expect = 8.4
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 446 FEWDDGYVSRFGLYLVDFESPNKTRTAKDSAKL---YSKVIASRRLPEDYNP 494
FEWD+G S + +D SP ++ + L Y+ SR +D P
Sbjct: 59 FEWDNGKFSLVDRFTIDGHSPTSLCVLENGSVLTANYNSASISRSKAKDEKP 110
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.136 0.429
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,786,814
Number of Sequences: 5004
Number of extensions: 131376
Number of successful extensions: 291
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 288
Number of HSP's gapped (non-prelim): 9
length of query: 523
length of database: 2,362,478
effective HSP length: 76
effective length of query: 447
effective length of database: 1,982,174
effective search space: 886031778
effective search space used: 886031778
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
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