GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002660-TA|BGIBMGA002660-PA|IPR001360|Glycoside
hydrolase, family 1
         (523 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099915-3|AAC68766.1|  475|Caenorhabditis elegans Hypothetical ...   317   1e-86
U41557-9|AAA83309.1|  479|Caenorhabditis elegans Hypothetical pr...   305   6e-83
Z83744-2|CAB06039.1|  430|Caenorhabditis elegans Hypothetical pr...    30   4.6  
AL132904-15|CAC35848.2|  518|Caenorhabditis elegans Hypothetical...    30   4.6  
Z81592-5|CAB04727.1|  434|Caenorhabditis elegans Hypothetical pr...    29   6.0  
U40940-5|AAA81706.2|  465|Caenorhabditis elegans Hypothetical pr...    29   6.0  
Z99710-4|CAB16865.1|  660|Caenorhabditis elegans Hypothetical pr...    29   8.0  
AL132877-16|CAC70111.1|  628|Caenorhabditis elegans Hypothetical...    29   8.0  
AF000195-8|AAN84853.1|  400|Caenorhabditis elegans Oxysterol bin...    29   8.0  
AF000195-7|AAC24270.1|  676|Caenorhabditis elegans Oxysterol bin...    29   8.0  

>AF099915-3|AAC68766.1|  475|Caenorhabditis elegans Hypothetical
           protein E02H9.5 protein.
          Length = 475

 Score =  317 bits (778), Expect = 1e-86
 Identities = 176/476 (36%), Positives = 262/476 (55%), Gaps = 30/476 (6%)

Query: 23  KFPENFIFGVSTAAAQIEGAWNVDGKSESIWDHLVHKNPEFVKDGSNADVASDSYHLYKR 82
           KFP+NF    +TAA QIEGA +++G+  S WD  +   P  + D S+ D++ D    YK 
Sbjct: 6   KFPKNFKLATATAAYQIEGAKDLNGRGFSTWD-AIRLEPGRILDNSDPDLSCDGLLKYKE 64

Query: 83  DAEMVHELGVDTYRFSVSWPRILPTGLTNEINELGIAYYNNLINEILKYNITPMITIYHW 142
           D  ++ E+GV  YRFS+SW RILP G  + INE GI +Y +L   + + NI P++T++H+
Sbjct: 65  DVALLAEIGVTNYRFSISWSRILPDGTLSTINEEGIKFYRDLCLLLKENNIEPVVTLFHF 124

Query: 143 DLPQKLQDIG-GWSNAHIVDYYTDYAKILFKNFGDRVKYWITFNE----PMQTCLEGYGG 197
           D+P  + D G  W N    +++  +A + F+ FGD VK WIT+NE       + ++  G 
Sbjct: 125 DMPLAIYDNGTAWLNRENCEHFEKFADLCFQKFGDLVKTWITYNEINCQAWGSIVKVEGE 184

Query: 198 TY---RAPALNRHGHAEYLCTHNLLKAHANVYHLFDKEYRTVNKGKIGIALDSNWAEPKT 254
            +     P +  H  A Y    N+L  HA +Y  +D+ Y+    G +GI     +  P T
Sbjct: 185 FWLCPERPEIENHKQAPYFGAANMLLTHAKIYRNYDQNYKPTQHGILGITNGGRFCFPAT 244

Query: 255 DTQEDRDAAELYLQTHVGWYAHPIYSAEGNYPPALIKLVDQKSKEQNFTRSRLPKFTTEE 314
           D+QED +A          +   PI S  G++P  +        +   F    +PKF+ EE
Sbjct: 245 DSQEDIEACNRARDWLFNFTIEPILSGSGDFPVLM-------RERMPF----IPKFSEEE 293

Query: 315 VEYIKGTADFFGLNHYTTYLL-TMADKEVGSIPSHQNDVGIVRVQDPNWPSESSSTWLKV 373
            E IKG+ DF G+N+Y ++L+    D E  S  S Q+D G V V+   W      TW++ 
Sbjct: 294 KEIIKGSTDFIGINYYLSFLVRAPKDGEKASSQS-QHDGGYVFVEG-KWDKICGETWIRY 351

Query: 374 VPYGFRKLLQWITKTYSGYPIIVTENGYADFNGLD------DKTRVSYYSHYLNALLHSI 427
            P G  K+L+++ + Y+  P+ +TENG  D  G D      D+ R+ Y S +L A+  ++
Sbjct: 352 APDGLLKILRYVKEKYANTPVFITENGCMDIVGQDQEDAFHDQHRIDYISGHLEAVAKAL 411

Query: 428 HEDGSVVEGYFAWSLMDNFEWDDGYVSRFGLYLVDFESPNKTRTAKDSAKLYSKVI 483
            E  +V+ GY  W+LMDNFEWDDG+  +FGL  VDFESP+KTRT K SA  Y + I
Sbjct: 412 DEGCNVI-GYTVWTLMDNFEWDDGFELKFGLCEVDFESPDKTRTMKKSAYFYKEFI 466


>U41557-9|AAA83309.1|  479|Caenorhabditis elegans Hypothetical
           protein C50F7.10 protein.
          Length = 479

 Score =  305 bits (748), Expect = 6e-83
 Identities = 170/479 (35%), Positives = 260/479 (54%), Gaps = 33/479 (6%)

Query: 23  KFPENFIFGVSTAAAQIEGAWNVDGKSESIWDHLVHKNPEFVKDGSNADVASDSYHLYKR 82
           KFP+NF    +TAA QIEGA N+DG+  S WD +  +N   + D S+ D++ +    YK 
Sbjct: 6   KFPKNFQLATATAAYQIEGAKNLDGRGFSTWDSIRSENGR-IHDNSDPDLSCEGRLKYKE 64

Query: 83  DAEMVHELGVDTYRFSVSWPRILPTGLTNEINELGIAYYNNLINEILKYNITPMITIYHW 142
           D  ++ ++GV +YRFS+SW RILP G    INE GI +Y ++   +    I P++T++H+
Sbjct: 65  DVALLSKIGVTSYRFSISWSRILPDGTLKTINEDGIQFYRDICLLLRDNGIEPIVTLFHF 124

Query: 143 DLPQKLQDIG-GWSNAHIVDYYTDYAKILFKNFGDRVKYWITFNE-PMQ---TCLEGYGG 197
           D+P  + D G  W N    +++  +A + F+ FGD VK WITFNE  MQ   + ++  G 
Sbjct: 125 DMPLSIYDNGTSWLNKENCEHFEKFADLCFQKFGDLVKTWITFNEINMQAWSSVVKIEGE 184

Query: 198 TYRA---PALNRHGHAEYLCTHNLLKAHANVYHLFDKEYRTVNKGKIGIALDSNWAEPKT 254
            +     P +  H  A Y+   N+L  HA +Y  + K Y+    G IGI     +  P +
Sbjct: 185 LWLCPDRPEIENHEQAPYIAATNMLLTHAKIYRNYQKNYKETQNGLIGITNGGRFCLPAS 244

Query: 255 DTQEDRDAAELYLQTHVGWYAHPIYSAEGNYPPALIKLVDQKSKEQNFTRSRLPKFTTEE 314
           D+  D DA    L     +   PI +  G++P ++        ++  F    LPKF+ EE
Sbjct: 245 DSPADLDACNRALDWLFNYTIEPILTDSGDFPASM-------REKLPF----LPKFSEEE 293

Query: 315 VEYIKGTADFFGLNHYTTYLLTMADKEVGSIPSHQND-VGIVRVQDPNWPSESSSTWLKV 373
            + IKG+ DF G+N+Y ++++   +   G  P+ Q++        +  W      TW++ 
Sbjct: 294 KKLIKGSTDFLGINYYLSHIVRNLND--GEEPASQSERDAAYAFNEGKWEKICGETWVRY 351

Query: 374 VPYGFRKLLQWITKTYSGYPIIVTENGYADFNG---------LDDKTRVSYYSHYLNALL 424
            P G   LL+++   Y+  P+ +TENG  D  G         LDDK R+ + S +L A+ 
Sbjct: 352 APDGLFGLLKYVRDKYNNIPVFITENGCMDLVGGEGRKEEEILDDKHRIKFISGHLEAVA 411

Query: 425 HSIHEDGSVVEGYFAWSLMDNFEWDDGYVSRFGLYLVDFESPNKTRTAKDSAKLYSKVI 483
            ++ E+G  V GY  W+LMDNFEWDDG+  +FG+  VDF+SP+KTRT K SAK Y   I
Sbjct: 412 KAL-EEGCNVIGYTLWTLMDNFEWDDGFGVKFGICRVDFDSPDKTRTMKYSAKYYQTFI 469


>Z83744-2|CAB06039.1|  430|Caenorhabditis elegans Hypothetical
           protein C06A12.5 protein.
          Length = 430

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 10  EIVNLAGG---KNTNYKFPEN---FIFGVSTAAAQIEGAWNVDGKSESIWDHLVHKNPEF 63
           E+VNL GG   K +  K+ EN    +F  S A   I  A  VD    +  D +V   PE+
Sbjct: 75  EVVNLWGGYADKESGRKWSENTKSVMFSASKAVCSIVIAVMVDRGLLNYADRVVDYWPEY 134

Query: 64  VKDGSNADVASD 75
            + G NA    D
Sbjct: 135 GRYGKNATTIED 146


>AL132904-15|CAC35848.2|  518|Caenorhabditis elegans Hypothetical
           protein Y111B2A.19 protein.
          Length = 518

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 43  WNVDGKSESIWDHLVHKNPEFVKDG-SNADVASDSYHLYKRDAEMVHEL 90
           W+ D  SE + D L H+NPE + D   N++  +D + + +    + H L
Sbjct: 469 WHHDDPSEDLDDLLSHENPETLDDTMRNSNTDNDLHLILRPQTTLKHSL 517


>Z81592-5|CAB04727.1|  434|Caenorhabditis elegans Hypothetical
           protein T16G1.5 protein.
          Length = 434

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 13/47 (27%), Positives = 24/47 (51%)

Query: 55  HLVHKNPEFVKDGSNADVASDSYHLYKRDAEMVHELGVDTYRFSVSW 101
           HLV +  E   D       ++ + +++R+A+ VH   V+ YR +  W
Sbjct: 88  HLVSQMKEKNPDAFTEQQEAELWAMFEREAQNVHNREVNLYRITEKW 134


>U40940-5|AAA81706.2|  465|Caenorhabditis elegans Hypothetical
           protein T03G6.3 protein.
          Length = 465

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 13/24 (54%), Positives = 17/24 (70%)

Query: 490 EDYNPDDFSAFNSAGSHFCSIFML 513
           E+  P D SAF S+G+  CSIF+L
Sbjct: 437 ENRGPVDSSAFRSSGTLLCSIFVL 460


>Z99710-4|CAB16865.1|  660|Caenorhabditis elegans Hypothetical
           protein F08A8.3 protein.
          Length = 660

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 245 LDSNWAEPKTDTQEDRDAAELYLQTHVGWYAHPIYSAEGNYPPALIKLVDQKSKEQNFTR 304
           L  +W +   +   + DA  +Y +  +G   HP+   +  + P L+    Q+ +E+   R
Sbjct: 78  LSRHWNQTPFNRDNEEDALHIYREV-LGMEGHPLALHDTMFIPTLVAQASQEQQEKWLGR 136

Query: 305 SR 306
           +R
Sbjct: 137 AR 138


>AL132877-16|CAC70111.1|  628|Caenorhabditis elegans Hypothetical
           protein Y105E8B.9 protein.
          Length = 628

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 393 PIIVTENGYADFNGLDDKTRVSYYSHYLNALLHSIH 428
           PIIVTE G     GL+ +  V +   Y N ++   H
Sbjct: 523 PIIVTEYGADSIPGLNQEPSVDFSEQYQNEVIQETH 558


>AF000195-8|AAN84853.1|  400|Caenorhabditis elegans Oxysterol
           binding protein (osbp)related protein 4, isoform b
           protein.
          Length = 400

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)

Query: 255 DTQEDRDAAELYLQTHVGWYAHPIYSAEGNYPPALIKLVDQKSKEQNFTRSRLPKFTTEE 314
           D+ ED D  E+Y         H I + + ++   L+ L+ Q S   + T+  LP F  E 
Sbjct: 12  DSNEDFD--EIYNNAE----EHDIGNVQQDHGSVLMHLLSQVSVGMDLTKVTLPTFILER 65

Query: 315 VEYIKGTADFF 325
              ++  ADFF
Sbjct: 66  RSLLEMYADFF 76


>AF000195-7|AAC24270.1|  676|Caenorhabditis elegans Oxysterol
           binding protein (osbp)related protein 4, isoform a
           protein.
          Length = 676

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)

Query: 255 DTQEDRDAAELYLQTHVGWYAHPIYSAEGNYPPALIKLVDQKSKEQNFTRSRLPKFTTEE 314
           D+ ED D  E+Y         H I + + ++   L+ L+ Q S   + T+  LP F  E 
Sbjct: 288 DSNEDFD--EIYNNAE----EHDIGNVQQDHGSVLMHLLSQVSVGMDLTKVTLPTFILER 341

Query: 315 VEYIKGTADFF 325
              ++  ADFF
Sbjct: 342 RSLLEMYADFF 352


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.136    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,519,072
Number of Sequences: 27539
Number of extensions: 668826
Number of successful extensions: 1644
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1625
Number of HSP's gapped (non-prelim): 10
length of query: 523
length of database: 12,573,161
effective HSP length: 85
effective length of query: 438
effective length of database: 10,232,346
effective search space: 4481767548
effective search space used: 4481767548
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)