GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002660-TA|BGIBMGA002660-PA|IPR001360|Glycoside
hydrolase, family 1
         (523 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     24   3.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   6.2  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   8.2  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)

Query: 424 LHSIHEDGSVVEGYFAWSLMDNFEWDDG 451
           +HSI +  S+V    A+  +DN  W DG
Sbjct: 20  IHSISD--SLVNAKLAFGFLDNSVWADG 45


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 16/56 (28%), Positives = 22/56 (39%)

Query: 436 GYFAWSLMDNFEWDDGYVSRFGLYLVDFESPNKTRTAKDSAKLYSKVIASRRLPED 491
           G+ A  L   F W     S  G +++  E+P      K     YS V   + LP D
Sbjct: 479 GFVAMVLDRLFLWIFTIASIVGTFIILCEAPALRDNTKPIDMEYSSVAQQQFLPHD 534


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 294 DQKSKEQNFTRSRLPKFTTE 313
           +Q S+EQ F R RL + T +
Sbjct: 112 EQLSREQRFLRRRLEQLTNQ 131


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,428
Number of Sequences: 429
Number of extensions: 7821
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 3
length of query: 523
length of database: 140,377
effective HSP length: 61
effective length of query: 462
effective length of database: 114,208
effective search space: 52764096
effective search space used: 52764096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)