GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002659-TA|BGIBMGA002659-PA|IPR001279|Beta-lactamase-like
         (153 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomy...    37   0.002
SPCC13B11.03c |||hydroxyacylglutathione hydrolase |Schizosacchar...    36   0.003
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    28   0.72 
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    27   1.3  
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    26   2.9  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    26   2.9  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    25   5.1  
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    25   5.1  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    25   6.7  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    25   6.7  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    24   8.8  
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po...    24   8.8  

>SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 256

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 8/88 (9%)

Query: 23  INYVVSTHGHSDHVGNNNLFLN---AKHIVGFSISFREKYFMHPFDKGEAYKIND-SVKV 78
           + Y+++TH H DH G N   L+   +  + G   +    Y   P DK E +K+ +  V+ 
Sbjct: 56  LQYILTTHHHYDHAGGNEDILSYFPSLKVYGGKNASGVTY--TPKDK-EIFKVGEVQVEA 112

Query: 79  IPTPGHTQSDVTVIATTRRGEAIAITGD 106
           + TP HTQ  +    ++    A+  TGD
Sbjct: 113 LHTPCHTQDSICYYVSSPSKRAV-FTGD 139


>SPCC13B11.03c |||hydroxyacylglutathione hydrolase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 256

 Score = 35.9 bits (79), Expect = 0.003
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 4/83 (4%)

Query: 26  VVSTHGHSDHVGNN-NLFLNAKHIVGFSISFREKYFMHPFDKGEAYKI-NDSVKVIPTPG 83
           +++TH H+DH G N NL     H+  +  S  +    H     E  +I N  ++ + TP 
Sbjct: 59  ILTTHHHADHSGGNLNLKKEFPHVTIYGGS-DQNGVSHVLQDKETLRIGNVQIEALHTPC 117

Query: 84  HTQSDVTVIATTRRGEAIAITGD 106
           HT+  +   A +    A+  TGD
Sbjct: 118 HTRDSICFYAHSSNEHAV-FTGD 139


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 27.9 bits (59), Expect = 0.72
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 48  IVGFSISFREKYFMHPFDKGEAYKINDSVKVIPTPGHTQSDVTVIAT 94
           I GF   +R+ Y   PF+  E Y I DS  +IP P      + ++ T
Sbjct: 157 ITGFEEPWRKTYASIPFNTLEYYNI-DSWALIPNPFSPDLGMDIVVT 202


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 19  IPEAINYVVSTHGHSDHVGNNNLFLNAKHIVGFSISFREKYFMHPFDKGEAYKINDSVKV 78
           +P +I  +V  H     + NNN+F+ +K+   F+I       +  +  G  Y+ + SV  
Sbjct: 186 LPHSIKDLV--HASPIRLLNNNVFVGSKNTTLFTIDVSNGDIVSQYPSGHRYETHHSVHN 243

Query: 79  IPT 81
           + T
Sbjct: 244 LGT 246


>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 16/45 (35%), Positives = 21/45 (46%)

Query: 54  SFREKYFMHPFDKGEAYKINDSVKVIPTPGHTQSDVTVIATTRRG 98
           ++  K++M  FDK     +  SVK I   G     V V A T RG
Sbjct: 59  TYNSKFYMGIFDKEIIDNLPPSVKFICHLGAGYETVDVAACTARG 103


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)

Query: 13  LQQNQMIPEAINYVV-STHGHSDHVGNNNLFLNAK 46
           +Q N   P+   +V  S+ GH+D+ GN++L L++K
Sbjct: 393 VQSNSRQPKVGFHVNNSSSGHNDNEGNHSLILSSK 427


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 27  VSTHGHSDHVGNNNLFLNAK--HIVGFSISFREKY 59
           + T+G   H+G+ +LF++ K    + F   F E Y
Sbjct: 636 LGTNGPVTHIGSTSLFIDGKIESFISFQGDFNEVY 670


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 35  HVGNNNLFLNAKHIVGFSISFREKYFMHPFDKGEAYKINDSVK-VIPTPGHTQSDVTVIA 93
           HV  +   +NA  ++     F  K        G  ++ N++VK V PTP +  SD+  +A
Sbjct: 355 HVDKSLPGINAPSVLSMENDFSTKKMSSNI--GHVFQ-NETVKYVFPTPLYLVSDILQLA 411

Query: 94  TTRR 97
           T  R
Sbjct: 412 THNR 415


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 840

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 16 NQMIPEAIN-YVVSTHGHSDHVGNNNLFLNAKHIV-GFSISFREKYFMHPFD 65
          N+  P+  N +  S + H+D+  NN  F NA+    G +IS  + Y+  P D
Sbjct: 23 NKDYPDRFNEFDNSQNDHNDYTQNNAQFQNAQTTTFGRTISRVKAYYEIPED 74


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 7/52 (13%)

Query: 37  GNNNLFLNAKHIVGFSISFREKYFMHPFDKGEA------YKINDSVKVIPTP 82
           G+NNLFL+ +H +G +    +++    F+  +A      YK N + KVI +P
Sbjct: 99  GSNNLFLDPRHQLGDNSQNAQRHHEPSFNSEKASYTSTPYK-NVAPKVIDSP 149


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 5/37 (13%)

Query: 63  PFDKGEAYKINDSVK----VIPTPGHTQSDVTVIATT 95
           P D+ + Y IN S+     V PTP H+ SD   +A T
Sbjct: 105 PSDRQQDY-INPSLHLNRTVFPTPQHSISDANFLANT 140


>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 451

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 8/33 (24%), Positives = 20/33 (60%)

Query: 10  KNALQQNQMIPEAINYVVSTHGHSDHVGNNNLF 42
           +N L+  ++IPE +  + S++ ++ +  + N F
Sbjct: 339 RNVLRTRELIPEFLEKIRSSYSNNQNFDSQNAF 371


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.132    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 734,449
Number of Sequences: 5004
Number of extensions: 27982
Number of successful extensions: 76
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 71
Number of HSP's gapped (non-prelim): 12
length of query: 153
length of database: 2,362,478
effective HSP length: 67
effective length of query: 86
effective length of database: 2,027,210
effective search space: 174340060
effective search space used: 174340060
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 50 (24.2 bits)