Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002659-TA|BGIBMGA002659-PA|IPR001279|Beta-lactamase-like
(153 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0738 - 19828852-19828892,19830033-19830156,19830515-198307... 37 0.006
02_05_1317 - 35683659-35683756,35683904-35683966,35684068-356841... 34 0.058
02_05_1316 - 35679456-35679538,35679660-35679722,35679824-356799... 33 0.076
01_06_0183 - 27268190-27268281,27268454-27268478,27268568-272686... 33 0.076
03_02_0896 - 12233706-12233801,12234005-12234181,12234741-122348... 31 0.31
12_01_1105 + 11672118-11673245 29 1.2
07_03_1642 - 28319790-28321445 29 1.2
08_02_0969 - 23126389-23126670,23126764-23126947,23127017-231278... 28 3.8
02_04_0130 + 20025414-20025531,20026357-20026585,20026909-200270... 27 6.6
05_03_0258 - 11153709-11156090 27 8.7
>09_04_0738 -
19828852-19828892,19830033-19830156,19830515-19830718,
19831505-19831690,19832098-19832172
Length = 209
Score = 37.1 bits (82), Expect = 0.006
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 10/90 (11%)
Query: 5 DADKIKNALQQNQMIPEAINYVVSTHGHSDHVGNNNLFLNAKHIVGFSISFREKYFMHPF 64
+A I NAL++ + + Y+++TH H DH G NL L AK+ S +++ +
Sbjct: 114 EATPIINALEKRN---QNLTYILNTHHHYDHTG-GNLELKAKYGAKVIGSAKDRDRIPGI 169
Query: 65 D----KGEAYKI-NDSVKVIPTPGHTQSDV 89
D +G+ + V V+ TPGHT SDV
Sbjct: 170 DITLSEGDTWMFAGHQVLVMETPGHT-SDV 198
>02_05_1317 -
35683659-35683756,35683904-35683966,35684068-35684182,
35684385-35684486,35684687-35684756,35684878-35684952,
35685188-35685279,35685386-35685493,35685560-35685640,
35685728-35685771,35685858-35685984
Length = 324
Score = 33.9 bits (74), Expect = 0.058
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 70 YKINDSVKVIPTPGHTQSDVTVIATTRRGEAIAITGDLFERREDIENPSIWLEAGSEDPV 129
+ I ++I TPGHTQ V + + TGD + E+ ++ ++L +
Sbjct: 217 WNIGADFELIHTPGHTQGSVCLFYKPVKA---LFTGDHVAKSEESDDLYLFLMYSRQPVS 273
Query: 130 QQMKNRSKVAD-SASWIVPGHG 150
Q+ + K+ W +PGHG
Sbjct: 274 LQLDSMRKLLKLDFEWFLPGHG 295
>02_05_1316 -
35679456-35679538,35679660-35679722,35679824-35679938,
35680271-35680372,35680667-35680736,35681182-35681273,
35681542-35681622,35681697-35681740,35681829-35681976
Length = 265
Score = 33.5 bits (73), Expect = 0.076
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 70 YKINDSVKVIPTPGHTQSDVTVIATTRRGEAIAITGDLFERREDIENPSIWLEAGSEDPV 129
+ I ++I TPGHT+ V + + TGD + E+ ++ ++L +
Sbjct: 163 WDIGADFELIHTPGHTEGSVCLFYKPVKA---LFTGDHVAKSEESDDLDLFLMYSKQSVG 219
Query: 130 QQMKNRSKVAD-SASWIVPGHG 150
Q+ + K+ W +PGHG
Sbjct: 220 LQLDSMRKLLKLDFEWFLPGHG 241
>01_06_0183 -
27268190-27268281,27268454-27268478,27268568-27268621,
27268688-27268747,27269166-27269300,27270106-27270213,
27270330-27270458,27270845-27270905,27271081-27271112,
27271161-27271289
Length = 274
Score = 33.5 bits (73), Expect = 0.076
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
Query: 25 YVVSTHGHSDHVGNNNLFL----NAKHIVGFSISFREKYFMHPFDKGEAYKINDSVKVIP 80
Y ++TH H+DHV L K ++ + +F+ DK Y N ++V
Sbjct: 99 YAMNTHVHADHVTGTGLIKTKLPGVKSVIAKVSKAKADHFIEHGDK--IYFGNLFLEVRS 156
Query: 81 TPGHTQSDVTVI---ATTRRGEAIAITGD 106
TPGHT VT + + +A TGD
Sbjct: 157 TPGHTAGCVTYVTGEGDDQPSPRMAFTGD 185
>03_02_0896 -
12233706-12233801,12234005-12234181,12234741-12234854,
12234928-12235006,12235372-12235533,12235957-12236079,
12236139-12236218
Length = 276
Score = 31.5 bits (68), Expect = 0.31
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 23 INYVVSTHGHSDHVGNNNLFLNAK---HIVGFSISFREKYFMHPFDKGEAYKINDSVKV- 78
I+ V++TH H DH G N + + G S+ K + G + +++
Sbjct: 58 IDCVLTTHHHWDHAGGNEKMAQSVPGIKVYGGSLD-NVKGCTDQVENGTKLSLGKDIEIL 116
Query: 79 -IPTPGHTQSDVTVIATTRRGEAIAI-TGD 106
+ TP HT+ ++ T++ E A+ TGD
Sbjct: 117 CLHTPCHTKGHISYYVTSKEEEDPAVFTGD 146
>12_01_1105 + 11672118-11673245
Length = 375
Score = 29.5 bits (63), Expect = 1.2
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 58 KYFMHPFDKGEAYKINDSVKVIPTPGHTQSDVTVIATTRRGEAI 101
+++ HP+ KG+ ++ + ++K+ P G T D+ T R + I
Sbjct: 37 EFYSHPYQKGDRWEYDMTIKINPPRGET--DMYYFRTRHRRDTI 78
>07_03_1642 - 28319790-28321445
Length = 551
Score = 29.5 bits (63), Expect = 1.2
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 5 DADKIKNALQQNQMIPEAINYVVSTHGH 32
+A++ KN +++ ++P+ +Y HGH
Sbjct: 441 EAERFKNEMEKKGLVPDIYSYAALVHGH 468
>08_02_0969 -
23126389-23126670,23126764-23126947,23127017-23127834,
23127953-23128642
Length = 657
Score = 27.9 bits (59), Expect = 3.8
Identities = 18/68 (26%), Positives = 27/68 (39%)
Query: 46 KHIVGFSISFREKYFMHPFDKGEAYKINDSVKVIPTPGHTQSDVTVIATTRRGEAIAITG 105
KH V F I Y + F +G A ++D+ + H Q T RR +
Sbjct: 216 KHPVLFHIEEIHDYTTYTFRRGRAEDVDDNTGALARDPHDQGSKTTREDGRRRGDLGGRR 275
Query: 106 DLFERRED 113
D+ + R D
Sbjct: 276 DIRDDRRD 283
>02_04_0130 +
20025414-20025531,20026357-20026585,20026909-20027032,
20027441-20027497,20027613-20027804,20027882-20027959,
20028437-20028619,20028715-20028795,20029196-20029228,
20029448-20029513,20029591-20029683,20030106-20030231,
20030395-20030508,20030973-20031068,20031159-20031256,
20031416-20031831,20032025-20032473,20032810-20032905
Length = 882
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 23 INYVVSTHGHSDHVG 37
I V+ THGH DH+G
Sbjct: 139 IEAVIITHGHEDHIG 153
>05_03_0258 - 11153709-11156090
Length = 793
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 3 AWDADKIKNALQQNQMIPEAINYVVSTHG 31
+W+A+KI L+ +Q+ P+ ++Y +G
Sbjct: 652 SWEAEKILKQLKSSQVKPDVVSYNTVING 680
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.132 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,679,330
Number of Sequences: 37544
Number of extensions: 174635
Number of successful extensions: 381
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 375
Number of HSP's gapped (non-prelim): 10
length of query: 153
length of database: 14,793,348
effective HSP length: 76
effective length of query: 77
effective length of database: 11,940,004
effective search space: 919380308
effective search space used: 919380308
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)
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