GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002658-TA|BGIBMGA002658-PA|IPR008516|Protein of unknown
function DUF798
         (426 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0353 + 42962769-42962972,42963062-42963138,42963571-429638...    30   4.1  
06_03_0401 + 20424932-20425847,20425908-20426144,20426184-204262...    29   5.4  
03_06_0589 + 34926560-34927198                                         29   5.4  
08_01_0784 + 7600691-7601055,7601530-7601765,7601896-7602068,760...    29   7.1  
11_04_0037 - 12642141-12642239,12643352-12643618,12643682-126437...    29   9.4  
01_01_0757 - 5840736-5842574                                           29   9.4  

>01_07_0353 +
           42962769-42962972,42963062-42963138,42963571-42963817,
           42963907-42964476,42964998-42965171,42965514-42965640,
           42965719-42965828,42966707-42966907,42966999-42967966,
           42968110-42968358,42968760-42969105
          Length = 1090

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 7/110 (6%)

Query: 257 SNFHGTRPVSYHVPRNEETVSEIVNNAYEPAPQVESVPIV---VNRNNTIGRSSIKSSGY 313
           S FH T     ++P +   V       Y P P+ +S+ ++   +     +G SS +S   
Sbjct: 649 STFHPTNNYRIYLPGSLSQVILHAAPGYAPLPKPQSMELIHKTMEPTRGVGNSS-ESINS 707

Query: 314 DVAGPYKEPKSVRTYDSKPLSNYDAKYDTNSARNYNTNVPTYDNIENVYD 363
           D             YDS+  S  D   D N+A + NT     D + +VYD
Sbjct: 708 DAESGSSTYDGGSVYDSE--SEVDGSSDRNAA-DSNTKDNQEDPLVHVYD 754


>06_03_0401 +
           20424932-20425847,20425908-20426144,20426184-20426262,
           20426308-20427220
          Length = 714

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 3/75 (4%)

Query: 285 EPAPQVESVPIVVNRNNTIGRSSIKSSGYDVAGPYKEPKSVRTYDSKPLSNYDAKYDTNS 344
           +P   +E+V ++  R  T G +    S  D A   KE +  +T   KPL +  + +  + 
Sbjct: 369 QPDFSIENVKVITTRGGTTGITKEAPSS-DSAD--KEVQPEKTVPQKPLVDEQSAHFVDV 425

Query: 345 ARNYNTNVPTYDNIE 359
            R  + NVP  D ++
Sbjct: 426 IRKIHINVPLLDAMQ 440


>03_06_0589 + 34926560-34927198
          Length = 212

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 262 TRPVSYHVPRNEETVSEIVNNAYEPAPQVESVPIVVNR-NNTIGRSSIKSSGYDVAGPYK 320
           T P  YH PR   T    V  A +P P++ +  +   R  N  GR  ++    D    YK
Sbjct: 111 TVPAFYHRPRKTATFHVTVGGAGKPVPKLTAAGVAAFRAENATGRFEVEVR-LDTVMQYK 169

Query: 321 EPKS 324
             K+
Sbjct: 170 ARKA 173


>08_01_0784 +
           7600691-7601055,7601530-7601765,7601896-7602068,
           7602344-7602430,7602538-7602605,7602732-7602849,
           7602983-7603042,7603135-7603257,7603377-7603448
          Length = 433

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 327 TYDSKPLSNYDAKYDTNSARNYNTNVPTYDNIEN 360
           T+  K   + +A  D N A N NT   TYD +++
Sbjct: 206 TFKQKEAGSMEATTDANVAVNQNTGADTYDKVKS 239


>11_04_0037 -
           12642141-12642239,12643352-12643618,12643682-12643750,
           12643919-12644116,12644262-12644267
          Length = 212

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 12/24 (50%), Positives = 13/24 (54%)

Query: 370 NYDGRIDTVGGCESPSYGYGDSEW 393
           NYDG  D  GG     YGY D +W
Sbjct: 17  NYDGDGDLGGGGGCYGYGYRDGDW 40


>01_01_0757 - 5840736-5842574
          Length = 612

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 15/48 (31%), Positives = 21/48 (43%)

Query: 340 YDTNSARNYNTNVPTYDNIENVYDRGQMNTNYDGRIDTVGGCESPSYG 387
           YD       NT+  T    + + +R   +T    RI   G  ESPS+G
Sbjct: 370 YDAPRLAAVNTSHTTASRFDGLSERYYYHTTASRRISAAGWVESPSHG 417


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.134    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,419,413
Number of Sequences: 37544
Number of extensions: 376295
Number of successful extensions: 729
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 726
Number of HSP's gapped (non-prelim): 6
length of query: 426
length of database: 14,793,348
effective HSP length: 84
effective length of query: 342
effective length of database: 11,639,652
effective search space: 3980760984
effective search space used: 3980760984
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)