Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002657-TA|BGIBMGA002657-PA|undefined
         (256 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR457253-1|CAG33534.1|  149|Homo sapiens PLEKHJ1 protein.              50   8e-06
BC008966-1|AAH08966.1|  149|Homo sapiens pleckstrin homology dom...    50   8e-06
BC003084-1|AAH03084.1|  149|Homo sapiens pleckstrin homology dom...    50   8e-06
AK001159-1|BAA91525.1|  149|Homo sapiens protein ( Homo sapiens ...    50   8e-06
BC034809-1|AAH34809.1|  249|Homo sapiens family with sequence si...    35   0.24 

>CR457253-1|CAG33534.1|  149|Homo sapiens PLEKHJ1 protein.
          Length = 149

 Score = 50.0 bits (114), Expect = 8e-06
 Identities = 20/54 (37%), Positives = 36/54 (66%)

Query: 12  FRDEPEKRHVFAARAEDNVVKWVISLRECSYEYLRNRLHTLQSKIFSITGKDPL 65
           F ++PE+++ F   +E+   +W+ +LR  SYE++R  L   +++I  +TGKDPL
Sbjct: 78  FIEDPERKYHFECSSEEQCQEWMEALRRASYEFMRRSLIFYRNEIRKVTGKDPL 131


>BC008966-1|AAH08966.1|  149|Homo sapiens pleckstrin homology domain
           containing, family J member 1 protein.
          Length = 149

 Score = 50.0 bits (114), Expect = 8e-06
 Identities = 20/54 (37%), Positives = 36/54 (66%)

Query: 12  FRDEPEKRHVFAARAEDNVVKWVISLRECSYEYLRNRLHTLQSKIFSITGKDPL 65
           F ++PE+++ F   +E+   +W+ +LR  SYE++R  L   +++I  +TGKDPL
Sbjct: 78  FIEDPERKYHFECSSEEQCQEWMEALRRASYEFMRRSLIFYRNEIRKVTGKDPL 131


>BC003084-1|AAH03084.1|  149|Homo sapiens pleckstrin homology domain
           containing, family J member 1 protein.
          Length = 149

 Score = 50.0 bits (114), Expect = 8e-06
 Identities = 20/54 (37%), Positives = 36/54 (66%)

Query: 12  FRDEPEKRHVFAARAEDNVVKWVISLRECSYEYLRNRLHTLQSKIFSITGKDPL 65
           F ++PE+++ F   +E+   +W+ +LR  SYE++R  L   +++I  +TGKDPL
Sbjct: 78  FIEDPERKYHFECSSEEQCQEWMEALRRASYEFMRRSLIFYRNEIRKVTGKDPL 131


>AK001159-1|BAA91525.1|  149|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10297 fis, clone NT2RM1001074. ).
          Length = 149

 Score = 50.0 bits (114), Expect = 8e-06
 Identities = 20/54 (37%), Positives = 36/54 (66%)

Query: 12  FRDEPEKRHVFAARAEDNVVKWVISLRECSYEYLRNRLHTLQSKIFSITGKDPL 65
           F ++PE+++ F   +E+   +W+ +LR  SYE++R  L   +++I  +TGKDPL
Sbjct: 78  FIEDPERKYHFECSSEEQCQEWMEALRRASYEFMRRSLIFYRNEIRKVTGKDPL 131


>BC034809-1|AAH34809.1|  249|Homo sapiens family with sequence
           similarity 109, member A protein.
          Length = 249

 Score = 35.1 bits (77), Expect = 0.24
 Identities = 17/70 (24%), Positives = 36/70 (51%)

Query: 18  KRHVFAARAEDNVVKWVISLRECSYEYLRNRLHTLQSKIFSITGKDPLLLVPRNEGACLW 77
           + +V AA ++D +  WV +L   S++YLR  +  L+ ++ ++ G   + L      +   
Sbjct: 89  RTYVLAAESQDAMEGWVKALSRASFDYLRLVVRELEQQLAAVRGGGGMALPQPQPQSLPL 148

Query: 78  APAVPFSTTP 87
            P++P +  P
Sbjct: 149 PPSLPSALAP 158


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.316    0.130    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,262,328
Number of Sequences: 224733
Number of extensions: 1475152
Number of successful extensions: 3052
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3047
Number of HSP's gapped (non-prelim): 5
length of query: 256
length of database: 73,234,838
effective HSP length: 88
effective length of query: 168
effective length of database: 53,458,334
effective search space: 8981000112
effective search space used: 8981000112
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 64 (29.9 bits)