GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002657-TA|BGIBMGA002657-PA|undefined
         (256 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067949-8|AAX88812.1|  565|Caenorhabditis elegans Peroxisomal m...    28   5.7  
AF067949-7|AAO25995.2|  626|Caenorhabditis elegans Peroxisomal m...    28   5.7  
AF067949-6|AAC19238.1|  598|Caenorhabditis elegans Peroxisomal m...    28   5.7  
Z14092-2|CAA78469.2|  307|Caenorhabditis elegans Hypothetical pr...    28   7.5  

>AF067949-8|AAX88812.1|  565|Caenorhabditis elegans Peroxisomal
           membrane protein relatedprotein 5, isoform c protein.
          Length = 565

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/51 (35%), Positives = 23/51 (45%)

Query: 122 RTEFIQKATFYTNESKPKSEKDEECTFALGRSKTSALLPGSVNLMDSSIFD 172
           R    Q+  F   E++ KS  DEE    L   K   LLP   N+ DS  F+
Sbjct: 459 RLSLKQQLVFPAEENEEKSGNDEEIVRILHELKLGHLLPIVGNIHDSVDFE 509


>AF067949-7|AAO25995.2|  626|Caenorhabditis elegans Peroxisomal
           membrane protein relatedprotein 5, isoform b protein.
          Length = 626

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/51 (35%), Positives = 23/51 (45%)

Query: 122 RTEFIQKATFYTNESKPKSEKDEECTFALGRSKTSALLPGSVNLMDSSIFD 172
           R    Q+  F   E++ KS  DEE    L   K   LLP   N+ DS  F+
Sbjct: 487 RLSLKQQLVFPAEENEEKSGNDEEIVRILHELKLGHLLPIVGNIHDSVDFE 537


>AF067949-6|AAC19238.1|  598|Caenorhabditis elegans Peroxisomal
           membrane protein relatedprotein 5, isoform a protein.
          Length = 598

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/51 (35%), Positives = 23/51 (45%)

Query: 122 RTEFIQKATFYTNESKPKSEKDEECTFALGRSKTSALLPGSVNLMDSSIFD 172
           R    Q+  F   E++ KS  DEE    L   K   LLP   N+ DS  F+
Sbjct: 459 RLSLKQQLVFPAEENEEKSGNDEEIVRILHELKLGHLLPIVGNIHDSVDFE 509


>Z14092-2|CAA78469.2|  307|Caenorhabditis elegans Hypothetical
           protein R107.2 protein.
          Length = 307

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)

Query: 204 KVFAEHGRHLNTTGILDDIP 223
           + F +HGR +NT  +LD+IP
Sbjct: 266 RAFEKHGRSMNTPLLLDEIP 285


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.130    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,424,205
Number of Sequences: 27539
Number of extensions: 258379
Number of successful extensions: 691
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 687
Number of HSP's gapped (non-prelim): 4
length of query: 256
length of database: 12,573,161
effective HSP length: 80
effective length of query: 176
effective length of database: 10,370,041
effective search space: 1825127216
effective search space used: 1825127216
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)