GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002657-TA|BGIBMGA002657-PA|undefined
         (256 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.89 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.6  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   4.8  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           22   6.3  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           22   6.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.3  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 61  GKDPLLLVPRNEGACLWAPAVPFSTTPACTVNTSSF 96
           G  P  +V +N G CL+ P   F +T  C ++ + F
Sbjct: 122 GTYPTNVVVKNNGTCLYVPPGIFKST--CKIDITWF 155


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 15  EPEKRHVFAARAEDNVVKWVISLRECSYEYLRNRLHTLQSKIFSITG 61
           EP  +      A+D + ++  S+R  + E  R R  ++Q ++ ++TG
Sbjct: 58  EPRSKEEILLHAKDFLEQYFSSIRRLNSEAHRIRWESVQKEV-TVTG 103


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 2/32 (6%)

Query: 203 VKVFAEHGRHLNTTGILDDIPVPPRRKISPKH 234
           V   + +G H    G +  I +PP RK+ P H
Sbjct: 76  VSSHSSNGIHTGFGGSI--ITIPPTRKLPPLH 105


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 190 LSPNSRRAELNYDVKVFAEHGRHLNTTGI 218
           L P+    E N  + +   HGR  N T I
Sbjct: 80  LEPSPPFCEKNPKLGILGTHGRQCNDTSI 108


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 190 LSPNSRRAELNYDVKVFAEHGRHLNTTGI 218
           L P+    E N  + +   HGR  N T I
Sbjct: 81  LEPSPPFCEKNPKLGILGTHGRQCNDTSI 109


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 224 VPPRRKISPKHLVPNDSDSNRELQTSSEDLI 254
           +PP +   P  ++ N++D N E++  S  LI
Sbjct: 103 LPPDKVWKPDIVLFNNADGNYEVRYKSNVLI 133


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.130    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,725
Number of Sequences: 429
Number of extensions: 2875
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 6
length of query: 256
length of database: 140,377
effective HSP length: 56
effective length of query: 200
effective length of database: 116,353
effective search space: 23270600
effective search space used: 23270600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)