GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002656-TA|BGIBMGA002656-PA|IPR009053|Prefoldin,
IPR013110|Histone methylation DOT1
         (1114 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    26   1.5  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               25   3.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   6.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   6.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   7.9  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 83  QQTYNQAVADPEKLNQYEPFSP 104
           QQ +N   A P   + Y+P+SP
Sbjct: 125 QQQHNNGYASPMSTSSYDPYSP 146



 Score = 24.2 bits (50), Expect = 6.0
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 5/31 (16%)

Query: 463 STIHNGSVTAPPPGCVGQRLSALGVQLQPAE 493
           ST  NGS     PG  G R   +GV+++PAE
Sbjct: 281 STTMNGS-----PGSGGIRSDQMGVKIEPAE 306


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 526 IQRMNTPEYANEIRNQIEKEKEKNHKLKSRASQLDKQINVLISDSVALLKARMSELGIHA 585
           I   N  +Y       I    EK+H +++   QLDK + +    ++++    +SE  I+A
Sbjct: 63  ISEGNIKKYLTNYSCFITCALEKSHIIQNDEIQLDKLVEMANRKNISIDVKMLSEC-INA 121

Query: 586 NNTVD 590
           N + D
Sbjct: 122 NKSTD 126


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 459 TTLESTIHNGSVTAPPPGCVGQRLSALGVQLQPAERLHSELDIP 502
           TTL   + N S+     G + Q + A  V L+  ER+ + LD P
Sbjct: 159 TTLLDALRNTSIAKSEFGGITQCIGAFDVTLESGERV-TFLDTP 201


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 458 STTLESTIHNGSVTAPPP 475
           +TT  +T  N S T PPP
Sbjct: 674 TTTTPNTTQNASATTPPP 691


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 315 GEGSGKRNLSAPPTRQPTPDLLNGNSNHST 344
           G+ +G  N S+  +  P     N N+NH T
Sbjct: 95  GDATGLSNRSSTSSNDPKNQYKNQNNNHYT 124


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.131    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 288,570
Number of Sequences: 429
Number of extensions: 11171
Number of successful extensions: 49
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 44
Number of HSP's gapped (non-prelim): 7
length of query: 1114
length of database: 140,377
effective HSP length: 65
effective length of query: 1049
effective length of database: 112,492
effective search space: 118004108
effective search space used: 118004108
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)