GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002655-TA|BGIBMGA002655-PA|undefined
         (464 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    26   0.49 
AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    23   4.5  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    23   4.5  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    23   6.0  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    23   6.0  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   7.9  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    22   7.9  

>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 26.2 bits (55), Expect = 0.49
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 297 ALKITTQLATRYGTPKVISEIMPLLLQTNLYDEVLVLL 334
           ++K  + +A   G  +  SE++P L +T +YDE  VLL
Sbjct: 33  SIKKLSTIALALGVERTRSELIPFLTET-IYDEDEVLL 69


>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 87  VRQMERLHATLSTRHALYKIKWVSDELLRLTTEPAQLIQALYL 129
           V Q+  LH  L+    +    +   +LLR+T     ++ AL+L
Sbjct: 261 VDQVAALHIKLTDTAHMINYAFCVQQLLRITVAFISIVTALFL 303


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 87  VRQMERLHATLSTRHALYKIKWVSDELLRLTTEPAQLIQALYL 129
           V Q+  LH  L+    +    +   +LLR+T     ++ AL+L
Sbjct: 261 VDQVAALHIKLTDTAHMINYAFCVQQLLRITVAFISIVTALFL 303


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 429 DRRSLIASLKNLHTD-SYLVSAAMFVLENM 457
           D  ++ ASLKNL+TD  +L     F+ + +
Sbjct: 212 DLEAIYASLKNLNTDHGFLDGQKPFIFQEV 241


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 429 DRRSLIASLKNLHTD-SYLVSAAMFVLENM 457
           D  ++  SLKNL+TD  +L+    F+ + +
Sbjct: 213 DLEAIYGSLKNLNTDHGFLLGQKPFIFQEV 242


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 2/24 (8%)

Query: 382 VCPVIKDDDLIEIWKHC--FRCKC 403
           +C ++K D L+E++K    F  KC
Sbjct: 94  ICTLLKKDKLLELFKRLIHFDTKC 117


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 2/24 (8%)

Query: 382 VCPVIKDDDLIEIWKHC--FRCKC 403
           +C ++K D L+E++K    F  KC
Sbjct: 112 ICTLLKKDKLLELFKRLIHFDTKC 135


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.134    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,157
Number of Sequences: 317
Number of extensions: 3857
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 7
length of query: 464
length of database: 114,650
effective HSP length: 59
effective length of query: 405
effective length of database: 95,947
effective search space: 38858535
effective search space used: 38858535
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 45 (22.2 bits)