GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002655-TA|BGIBMGA002655-PA|undefined
         (464 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    30   0.79 
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    28   2.4  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    28   3.2  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    28   3.2  
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    27   5.6  

>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 29.9 bits (64), Expect = 0.79
 Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 297 ALKITTQLATRYGTPKVISEIMPLLLQTNLYDEVLVLLLKSAS 339
           A+ I+ +LA +Y   +VI  +  LLLQ+ +YD VL+  L+ +S
Sbjct: 315 AILISMKLAFQYQLSQVIPTLK-LLLQSKVYDSVLLEALRQSS 356


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1131

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 199  TCPKMGAIYLS-RIAFDDESDFNKCKKLRALQCFMSVTDIETAIKVTNRNRDELWMSLLD 257
            TC +    YL       D+S F+    L++L  F +VT+I      TN+     W SL  
Sbjct: 987  TCAEKANWYLGFEFVKQDQSPFSMLSNLKSLSFFGNVTEIN-----TNKCMINSWTSLRP 1041

Query: 258  LLF 260
            +LF
Sbjct: 1042 VLF 1044


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 15/43 (34%), Positives = 20/43 (46%)

Query: 262 TKLENVDMPWVIPTFMHDKTRALELLLNAAKGNTEALKITTQL 304
           TK EN D+P   P ++ D   AL       KG  +  K+T  L
Sbjct: 450 TKEENADVPVSSPDYLKDLVNALNTSKEQHKGAIDKEKLTEAL 492


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 10/131 (7%)

Query: 19  SWRLISQEEPLLRTAHKCVR-YIANMEWAGACLFYVL--QGC-SRGADQVAAAQLCYQFA 74
           S +L+   E LLRT H+ +R +I+  E        VL  + C S  ++  A+ +  Y   
Sbjct: 595 SRKLVKGSEYLLRTYHEVIRIWISQQEAVIEKRNSVLSNKSCASSESNTPASVKQDYDDI 654

Query: 75  QRWAAFQPVNRAVRQMERLHATLSTRH----ALYKIKWVSDELLRLTTEPAQLIQALYLH 130
           Q W   + + +++  +     ++  R      L  +K ++ E L L+++  + +  +Y  
Sbjct: 655 QSWTIIEEI-QSLGVLHLSSPSVGIRKFAVALLNDVKQLNTEYLMLSSDKVE-VGDIYSE 712

Query: 131 PKFVDKMVHCD 141
           P  VD +  CD
Sbjct: 713 PTIVDVLKDCD 723


>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 269 MPWVIPTFMHDKTRALELLLNAAKGNTEALKITTQ 303
           M  + P+  +D T+ L LL+NA K    +  I+ Q
Sbjct: 149 MTHITPSIRNDSTKFLSLLINACKDRLSSSAISLQ 183


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.134    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,964,007
Number of Sequences: 5004
Number of extensions: 76085
Number of successful extensions: 162
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 159
Number of HSP's gapped (non-prelim): 6
length of query: 464
length of database: 2,362,478
effective HSP length: 75
effective length of query: 389
effective length of database: 1,987,178
effective search space: 773012242
effective search space used: 773012242
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 55 (26.2 bits)