Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002655-TA|BGIBMGA002655-PA|undefined
(464 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114... 34 0.21
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460... 34 0.21
08_01_0913 + 8995491-8995926,8995976-8997352,8997431-8998174,899... 33 0.48
09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539 33 0.64
02_01_0353 + 2545982-2549833 31 1.9
09_03_0169 - 13010909-13012033 29 5.9
03_05_0335 + 23259950-23259952,23260157-23260546,23263504-23263770 29 5.9
02_01_0361 - 2600398-2602780,2602815-2603479,2603553-2603981 29 5.9
11_01_0458 + 3536162-3537794,3537905-3538272 29 7.8
>04_04_1405 - 33305948-33309676,33309749-33310468,33310533-33311439,
33334405-33334484
Length = 1811
Score = 34.3 bits (75), Expect = 0.21
Identities = 19/63 (30%), Positives = 29/63 (46%)
Query: 60 GADQVAAAQLCYQFAQRWAAFQPVNRAVRQMERLHATLSTRHALYKIKWVSDELLRLTTE 119
G Q+ Q+C ++ R VR+MER + RH + ++DEL RL +
Sbjct: 1286 GDSQLVVNQVCKEYRSSDPQMDAYVRQVRRMERHFDGIELRHVPRRDNMIADELSRLASS 1345
Query: 120 PAQ 122
AQ
Sbjct: 1346 RAQ 1348
>02_03_0220 +
16545571-16545573,16545717-16545818,16545980-16546008,
16549421-16553036
Length = 1249
Score = 34.3 bits (75), Expect = 0.21
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 278 HDKTRALELLLNAAKGNTE----ALKITTQLATRYGTPKVISEIMPLLLQTNLYDEVLVL 333
H + + L+LL G + AL+ T A +G + ++I+PLL+Q L D+ L
Sbjct: 515 HKERKILKLLFKVKNGTPQQRKAALRQLTDKAQEFGAGPLFNKILPLLMQPTLEDQERHL 574
Query: 334 LLK 336
L+K
Sbjct: 575 LVK 577
>08_01_0913 +
8995491-8995926,8995976-8997352,8997431-8998174,
8998402-8998748
Length = 967
Score = 33.1 bits (72), Expect = 0.48
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 91 ERLHATLSTRHALYKIKWVSDELLRLTTEPAQLIQALYLHPKFVDKMVHCDI 142
E LHAT +T Y+ K E L + + A+ ++ YLH V +VHCDI
Sbjct: 758 EWLHATSTTTSTSYR-KLNMVERLHIAVDVAEALE--YLHHHIVPPIVHCDI 806
>09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539
Length = 1908
Score = 32.7 bits (71), Expect = 0.64
Identities = 19/63 (30%), Positives = 29/63 (46%)
Query: 60 GADQVAAAQLCYQFAQRWAAFQPVNRAVRQMERLHATLSTRHALYKIKWVSDELLRLTTE 119
G Q+ Q+C ++ R VR+MER + RH + ++DEL RL +
Sbjct: 1377 GDSQLVVNQVCKEYRCSDPQMDVYVRQVRRMERHFDGIELRHVPRRDNMIADELSRLASS 1436
Query: 120 PAQ 122
AQ
Sbjct: 1437 RAQ 1439
>02_01_0353 + 2545982-2549833
Length = 1283
Score = 31.1 bits (67), Expect = 1.9
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 282 RALELLLNAAKGNTE----ALKITTQLATRYGTPKVISEIMPLLLQTNLYDEVLVLLLK 336
+ ++LLL G AL+ T A +G + ++I+PLL+Q L D+ LL+K
Sbjct: 474 KIMKLLLKVKNGTPPQRKTALRQLTDKAREFGAGPLFNKILPLLMQPTLEDQERHLLVK 532
>09_03_0169 - 13010909-13012033
Length = 374
Score = 29.5 bits (63), Expect = 5.9
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 324 TNLYDEVLVLLLKS---ASNPPTSLICAAWR-AVLLSPFQRA 361
++L +VLVL+L S +S+P +L+C WR A L PF A
Sbjct: 11 SSLPTDVLVLILGSLRWSSHPSVALVCRHWRSAASLCPFYPA 52
>03_05_0335 + 23259950-23259952,23260157-23260546,23263504-23263770
Length = 219
Score = 29.5 bits (63), Expect = 5.9
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 398 CFRCKCLGIGCLTLPYMTAKTRQGLPELLKIDRRSLIASLKNLHTDSYLVSAAMFVLENM 457
CFR C +GC LP ++ L + R ++A K L T V A + M
Sbjct: 6 CFRFYCENLGCFNLP---ENFKENLEAFFRSVRPRVVAPQKTLPTKKRAVPAPP-TFKTM 61
Query: 458 TQKTYR 463
KT R
Sbjct: 62 ADKTLR 67
>02_01_0361 - 2600398-2602780,2602815-2603479,2603553-2603981
Length = 1158
Score = 29.5 bits (63), Expect = 5.9
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 297 ALKITTQLATRYGTPKVISEIMPLLLQTNLYDEVLVLLLK 336
AL+ T A +G + ++I+PLL+Q + D+ LL+K
Sbjct: 368 ALRQLTDKAREFGAGPLFNKILPLLMQPTIEDQERHLLVK 407
>11_01_0458 + 3536162-3537794,3537905-3538272
Length = 666
Score = 29.1 bits (62), Expect = 7.8
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 98 STRHALYKIKWVSDELLRLTTEPAQLIQAL-YLHPKFVDKMVHCDINRAANEIADKNGI 155
+TRH K L + T+ + AL YLH +VHCD+N +N + DKN I
Sbjct: 447 TTRHDSNSSKLNHISLAQRTSIVLDVSSALEYLHHNNQGTIVHCDLN-PSNILLDKNMI 504
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.323 0.134 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,159,170
Number of Sequences: 37544
Number of extensions: 455147
Number of successful extensions: 1181
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1174
Number of HSP's gapped (non-prelim): 11
length of query: 464
length of database: 14,793,348
effective HSP length: 85
effective length of query: 379
effective length of database: 11,602,108
effective search space: 4397198932
effective search space used: 4397198932
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 62 (29.1 bits)
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