GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002655-TA|BGIBMGA002655-PA|undefined
         (464 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF114152-1|AAD12541.1| 2098|Drosophila melanogaster rough deal p...    68   2e-11
AE014297-4759|AAF57162.2| 2089|Drosophila melanogaster CG1569-PA...    68   2e-11

>AF114152-1|AAD12541.1| 2098|Drosophila melanogaster rough deal
            protein protein.
          Length = 2098

 Score = 68.1 bits (159), Expect = 2e-11
 Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 4/164 (2%)

Query: 1    MTARVRSEDGDSNKKELESWRLISQEEPLLRTAHKCVRYIANMEWAGACLFYVLQGCSRG 60
            M+A   S     +K + ESW L       L++  + V  + N   A   L++V      G
Sbjct: 1602 MSAVKNSISEYKSKNDSESWSLHPTNNAFLQSILRLVEKVNNPNKAFLILYFVSNYARDG 1661

Query: 61   ADQVAAAQLCYQFAQRWAAF--QPVNR-AVRQMERLHATLSTRHALYKIKWVSDELLRLT 117
            ADQV A+  C++F +        P +R  V +++R +    T+H LY      ++LLR  
Sbjct: 1662 ADQVEASYECWKFVKEKGHLITDPKSREQVAKVKRRYPIQKTQHLLYVYGLTDEKLLRQV 1721

Query: 118  TEPAQLIQALYLHPKFVDKMVHCDINRAANEIADKNGINVSSIR 161
              P +LIQALY H + + K    DIN    EIA  + + +++I+
Sbjct: 1722 ENPTELIQALY-HHELILKSSKVDINALVAEIAKLHDLCLATIQ 1764


>AE014297-4759|AAF57162.2| 2089|Drosophila melanogaster CG1569-PA
            protein.
          Length = 2089

 Score = 68.1 bits (159), Expect = 2e-11
 Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 4/164 (2%)

Query: 1    MTARVRSEDGDSNKKELESWRLISQEEPLLRTAHKCVRYIANMEWAGACLFYVLQGCSRG 60
            M+A   S     +K + ESW L       L++  + V  + N   A   L++V      G
Sbjct: 1603 MSAVKNSISEYKSKNDSESWSLHPTNNAFLQSILRLVEKVNNPNKAFLILYFVSNYARDG 1662

Query: 61   ADQVAAAQLCYQFAQRWAAF--QPVNR-AVRQMERLHATLSTRHALYKIKWVSDELLRLT 117
            ADQV A+  C++F +        P +R  V +++R +    T+H LY      ++LLR  
Sbjct: 1663 ADQVEASYECWKFVKEKGHLITDPKSREQVAKVKRRYPIQKTQHLLYVYGLTDEKLLRQV 1722

Query: 118  TEPAQLIQALYLHPKFVDKMVHCDINRAANEIADKNGINVSSIR 161
              P +LIQALY H + + K    DIN    EIA  + + +++I+
Sbjct: 1723 ENPTELIQALY-HHELILKSSKVDINALVAEIAKLHDLCLATIQ 1765


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.323    0.134    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,362,072
Number of Sequences: 52641
Number of extensions: 775090
Number of successful extensions: 1638
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1630
Number of HSP's gapped (non-prelim): 6
length of query: 464
length of database: 24,830,863
effective HSP length: 88
effective length of query: 376
effective length of database: 20,198,455
effective search space: 7594619080
effective search space used: 7594619080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 64 (29.9 bits)