Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002654-TA|BGIBMGA002654-PA|IPR014021|Helicase
superfamily 1 and 2 ATP-binding, IPR001650|Helicase, C-terminal,
IPR000629|ATP-dependent helicase, DEAD-box, IPR014001|DEAD-like
helicases, N-terminal, IPR011545|DEAD/DEAH box helicase, N-terminal
(607 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 244 4e-65
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 171 2e-43
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 154 3e-38
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 146 8e-36
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 140 5e-34
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 134 3e-32
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 128 2e-30
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 128 3e-30
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 127 5e-30
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 119 1e-27
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 119 1e-27
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 115 2e-26
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 104 4e-23
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 97 6e-21
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 91 5e-19
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 89 1e-18
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 82 2e-16
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 75 2e-14
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 74 7e-14
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 73 9e-14
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 71 5e-13
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 70 1e-12
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 64 5e-11
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 50 7e-07
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 46 2e-05
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 44 8e-05
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 43 1e-04
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 35 0.038
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 34 0.050
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 34 0.066
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 34 0.066
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 34 0.066
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 34 0.066
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 34 0.066
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 32 0.26
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 31 0.35
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 31 0.46
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 29 1.4
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 29 1.4
SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit... 29 1.9
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 29 1.9
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 29 1.9
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 29 2.5
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 29 2.5
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||... 29 2.5
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce... 29 2.5
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po... 28 3.3
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 28 4.3
SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces p... 28 4.3
SPAC3H1.03 |mug151||transcriptional regulator, HCNGP-like |Schiz... 27 5.7
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 27 5.7
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 27 5.7
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 27 7.5
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 27 7.5
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 27 7.5
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 27 7.5
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 27 7.5
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 27 10.0
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 27 10.0
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 27 10.0
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 27 10.0
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 27 10.0
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 244 bits (596), Expect = 4e-65
Identities = 157/496 (31%), Positives = 262/496 (52%), Gaps = 35/496 (7%)
Query: 110 VQRILPYWLSHPTVVSRDLNELSCPVEEQEWLHPVIKSTLLSEGITKLFPVQNQVVPFIL 169
+ +LP WL+ P V + + + + L + IT+ F VQ V+P +L
Sbjct: 106 ITSVLPKWLAEPITVDPNTTVEFSSLN----ISSKLVERLQKQNITRGFAVQAAVLPLLL 161
Query: 170 NEHTLPKLFQ-PRDVCISAPTGSGKTLSFVIPIVQLLMKDVGCKIRALVVLPVQELAAQV 228
+ ++ DVC+SA TGSGKTLS+VIPIVQ L ++R +V++P +EL QV
Sbjct: 162 QDGRHGPMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQV 221
Query: 229 AKVFKKYCNRTHLKVALLSGSVPFQQEQQELVRFTESVGWVSKVEIIVCTAGRLVEHLKT 288
AK F+ Y + L+V +G + E +L E+ +++++V T GRLV+H++
Sbjct: 222 AKTFEYYMSGAGLQVCAWTGQKSLRHETYQL-NGDEN---ECRIDVLVSTPGRLVDHIRN 277
Query: 289 TEGFNLQHLKFLVIDEADRIMDNIQNDWLYHVDHHIKQGSELMT-GKVQSLNWKNVSK-- 345
E F+LQHL+++VIDEADR++D DW+ V I L + L+ +N+S
Sbjct: 278 DESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEISHPKCLQNKSNILDLD-QNISPTF 336
Query: 346 ----QKLAP-------QKLLFSATLSQDPEKLEQWGLFQPKLFSAATNECFED-----ED 389
L P QKL+FSATL++DP K+ L P+L + D ED
Sbjct: 337 LPDIDTLLPYRLPSPLQKLVFSATLTRDPSKIASLKLHNPRLVLVQNKDMEVDDGGEIED 396
Query: 390 QIRKYATPAELKEHYVVCEAENKPLVLYNFLVEQKWDKVLCF---TNAAETTHRLTVLLN 446
++ P L+E++V +E KP++LY+ + + +LCF AA HRL L++
Sbjct: 397 DAIVFSVPPTLQEYHVSVSSE-KPILLYHLIHSKNLTNILCFVKSNEAAARLHRLLELIH 455
Query: 447 TWACKGLKVAELSAALDRSMRENVLKKFMLSEIDVLISTDALARGIDIPDCNYVISYDPP 506
+ +++L R R+ ++ +F ++++L+ +D +ARGID+ + VI+YDPP
Sbjct: 456 ESLNQSFSCGLFTSSLSRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPP 515
Query: 507 RNIKTYIHRVGRTGRAGKIGKAVTVLLPSQISLFKDLIKAGGKE-EIPEIKIN-TDVIDR 564
++++Y+HR+GRT RAG+ G A T++ + F L+K + I IKI + + +
Sbjct: 516 LSVRSYVHRIGRTARAGREGFAWTLVQSHEGHHFSKLVKQLRRTLPIKRIKIEFSHISEE 575
Query: 565 LFESYASAMNTTREKI 580
+Y A+ R ++
Sbjct: 576 FVVAYDKALEALRVEV 591
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 171 bits (417), Expect = 2e-43
Identities = 131/442 (29%), Positives = 221/442 (50%), Gaps = 56/442 (12%)
Query: 166 PFILNEHTLPKLFQPRDVCISAPTGSGKTLSFVIPIVQLLMKDVGCKIRALVVLPVQELA 225
P + + +P + RDV A TGSGKT +F +P++Q L + A+V+ P +ELA
Sbjct: 69 PTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPS-PFFAVVLAPTRELA 127
Query: 226 AQVAKVFKKYCNRTHLKVALLSGSVPFQQEQQELVRFTESVGWVSKVEIIVCTAGRLVEH 285
Q+++ F+ ++ ++ G + ++V T++V K ++VCT GRL++H
Sbjct: 128 YQISEQFEAIGGSIGVRSVVIVGGM-------DMV--TQAVALSKKPHVLVCTPGRLMDH 178
Query: 286 LKTTEGFNLQHLKFLVIDEADRIMDNIQNDWLYHVDHHIKQGSELMTGKVQSLNWKNVSK 345
L+ T+GF+L++LK+L++DEADR++D + G + K +
Sbjct: 179 LENTKGFSLKNLKYLIMDEADRLLD-------------------MDFGPIIDKILKIIPH 219
Query: 346 QKLAPQKLLFSATLSQDPEKLEQWGLFQPKLFSAATNECFEDEDQIRKYATPAELKEHYV 405
++ + LLFSAT++ EKL++ L QP + ++ K++T L + Y+
Sbjct: 220 ER---RTLLFSATMTSKVEKLQRASLHQPVRVAVSS-----------KFSTVDTLIQRYL 265
Query: 406 VCEAENKPLVLYNFLVEQKWDKVLCFTNAAETTHRLTVLLNTWACKGLKVAELSAALDRS 465
++K L + E + ++ F T RL +LL T G L L +S
Sbjct: 266 FFPFKHKDTYLVYLVNELAGNSIIIFARTVNDTQRLAILLRTL---GFSAIPLHGQLSQS 322
Query: 466 MRENVLKKFMLSEIDVLISTDALARGIDIPDCNYVISYDPPRNIKTYIHRVGRTGRAGKI 525
R L KF L++TD ARG+DIP + VI+YD P + K YIHRVGRT RAG+
Sbjct: 323 NRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRA 382
Query: 526 GKAVTVLLPSQISLFKDLIKAGGKEEIPEIKINTDVIDRLFESYASAMNTTREKINSELN 585
GK++ ++ + F + GK ++ E +I+ + + L E A RE I +
Sbjct: 383 GKSIALVTQYDLEPFLRIEATIGK-KMQEYEIDKEGVFLLSERVGEAQ---REAI---IQ 435
Query: 586 LKIKNSIEIKRSAKSKIQKRKK 607
+K I +R +K K+ ++K
Sbjct: 436 MK---EIHDRRKSKGKLHTKRK 454
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 154 bits (374), Expect = 3e-38
Identities = 130/469 (27%), Positives = 226/469 (48%), Gaps = 56/469 (11%)
Query: 150 LSEGITKLFPVQNQVVPFILNEHTLPKLFQPRDVCISAPTGSGKTLSFVIPIVQLLMKDV 209
LSE I K + + ++P L RDV +A TGSGKTL+F+IP +++L +
Sbjct: 96 LSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYA-L 154
Query: 210 GCKIR----ALVVLPVQELAAQVAKVFKKYCNRTHLKVALLSGSVPFQQEQQELVRFTES 265
K R +++ P +ELA Q+ V K+ H ++ G + E +LV+
Sbjct: 155 KFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVK---- 210
Query: 266 VGWVSKVEIIVCTAGRLVEHLKTTEGFNLQHLKFLVIDEADRIMDNIQNDWLYHVDHHIK 325
V ++V T GRL++HL+ T+GF ++L+ LVIDEADRI++ + ++
Sbjct: 211 -----GVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILE-------IGFEDEMR 258
Query: 326 QGSELMTGKVQSLNWKNVSKQKLAPQKLLFSATLSQDPEKLEQWGLFQPKLFSAATNECF 385
Q +++ + + Q LLFSAT + E L + S +
Sbjct: 259 QIMKILPSENR--------------QTLLFSATQTTKVEDLAR--------ISLKPGPLY 296
Query: 386 EDEDQIRKYATPAELKEHYVVCEAENKPLVLYNFLVEQKWDKVLCFTNAAETTHRLTVLL 445
+ D + +T L++ YVV +++ + L+L++FL KV+ F ++ + + LL
Sbjct: 297 VNVDSGKPTSTVEGLEQGYVVVDSDKRFLLLFSFLKRNLKKKVIVFMSSCASVKYMAELL 356
Query: 446 NTWACKGLKVAELSAALDRSMRENVLKKFMLSEIDVLISTDALARGIDIPDCNYVISYDP 505
N L V +L + R N +F +E +L+ T+ ARG+DIP ++++ YDP
Sbjct: 357 NYI---DLPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDP 413
Query: 506 PRNIKTYIHRVGRTGRAGK-IGKAVTVLLPSQISLFKDLIKAG---GKEEIPEIKINT-- 559
P + + YIHRVGRT R K GK++ L PS++ + L A + E P K+
Sbjct: 414 PDDPRDYIHRVGRTARGTKGTGKSLMFLAPSELGFLRYLKTAKVSLNEFEFPANKVANVQ 473
Query: 560 ----DVIDRLFESYASAMNTTREKINSELNLKIKNSIEIKRSAKSKIQK 604
++ + + SA + R + + + +K+ +I + +K+ K
Sbjct: 474 SQLEKLVSKNYYLQQSAKDGYRSYLQAYASYSLKSIFDINKLDLAKVAK 522
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 146 bits (354), Expect = 8e-36
Identities = 107/378 (28%), Positives = 176/378 (46%), Gaps = 45/378 (11%)
Query: 169 LNEHTLPKLFQPRDVCISAPTGSGKTLSFVIPIVQLLMKDVGCKIR---ALVVLPVQELA 225
+ + +P + RD+ +A TGSGKTL+F++P+++ L + + ALV+ P +ELA
Sbjct: 65 IQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELA 124
Query: 226 AQVAKVFKKYCNRTHLKVALLSGSVPFQQEQQELVRFTESVGWVSKVEIIVCTAGRLVEH 285
Q + K L+ G +++E++ L S++ I+VCT GRL++H
Sbjct: 125 IQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERL----------SRMNILVCTPGRLLQH 174
Query: 286 LKTTEGFNLQHLKFLVIDEADRIMDNIQNDWLYHVDHHIKQGSELMTGKVQSLNWKNVSK 345
+ F+ L+ L++DEADRI+D G + VS
Sbjct: 175 IDQAVNFDTSGLQMLILDEADRILD---------------MGFRTTLDAI-------VSS 212
Query: 346 QKLAPQKLLFSATLSQDPEKLEQWGLFQPKLFSAATNECFEDEDQIRKYATPAELKEHYV 405
+ Q +LFSAT ++ + L + L P S N+ +TP+ L + Y+
Sbjct: 213 LPVHRQTMLFSATQTKSVKDLARLSLQNPDFISVHENDTS---------STPSNLNQFYL 263
Query: 406 VCEAENKPLVLYNFLVEQKWDKVLCFTNAAETTHRLTVLLNTWACKGLKVAELSAALDRS 465
K +L+ F+ K + F ++ + + G+ + L ++
Sbjct: 264 TVPLTEKLDILFGFIRTHLKFKTIVFLSSCKQVRFVYETFRRMR-PGISLLHLHGKQKQT 322
Query: 466 MRENVLKKFMLSEIDVLISTDALARGIDIPDCNYVISYDPPRNIKTYIHRVGRTGRAGKI 525
R V KF S VL TD +ARG+D P ++VI D P ++ TYIHRVGRT R +
Sbjct: 323 TRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTARYNRS 382
Query: 526 GKAVTVLLPSQISLFKDL 543
G A+ +LLPS+ + K L
Sbjct: 383 GNALLLLLPSEEAFLKRL 400
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 140 bits (339), Expect = 5e-34
Identities = 112/425 (26%), Positives = 198/425 (46%), Gaps = 52/425 (12%)
Query: 142 HPVIKSTLLSEGITKLFPVQNQVVPFILNEHTLPKLFQPRDVCISAPTGSGKTLSFVIPI 201
H +S LS I K VP + + T+P +D+ +A TGSGKT +F++PI
Sbjct: 258 HSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPI 317
Query: 202 VQLLM---KDVGCKIRALVVLPVQELAAQVAKVFKKYCNRTHLKVALLSGSVPFQQEQQE 258
++ L+ K V R L++ P +ELA Q V K + T + V L G + + ++QE
Sbjct: 318 LERLLYRPKKVP-TTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQE 376
Query: 259 LVRFTESVGWVSKVEIIVCTAGRLVEHLKTTEGFNLQHLKFLVIDEADRIMDNIQNDWLY 318
L + + +I++ T GR ++H++ ++GF +++++ +V+DEADR++++
Sbjct: 377 LRK---------RPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLED------- 420
Query: 319 HVDHHIKQGSELMTGKVQSLNWKNVSKQKLAPQKLLFSATLSQDPEKLEQWGLFQPKLFS 378
G LN + + + Q +LFSAT++ + L + L +P
Sbjct: 421 --------------GFADELN-EIIQACPKSRQTMLFSATMTDKVDDLIRLSLNRPV--- 462
Query: 379 AATNECFEDEDQIRKYATPAELKEHYVVCEAEN---KPLVLYNFLVEQKWDKVLCFTNAA 435
F D K T L + +V + +P +L E + + F +
Sbjct: 463 ----RVFVD----NKKTTAKLLTQEFVRVRPQRELLRPAMLIYLCKELFHRRTIIFFRSK 514
Query: 436 ETTHRLTVLLNTWACKGLKVAELSAALDRSMRENVLKKFMLSEIDVLISTDALARGIDIP 495
H++ V+ + L E+ +L + R L+ F + + L++TD +RGIDI
Sbjct: 515 AFAHKMRVI---FGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIK 571
Query: 496 DCNYVISYDPPRNIKTYIHRVGRTGRAGKIGKAVTVLLPSQISLFKDLIKAGGKEEIPEI 555
VI+Y+ P + Y+HRVGRT RAG+ G+A+T+ + K + K + +
Sbjct: 572 GIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGDRKVLKGVFKNSSAQNTKLV 631
Query: 556 KINTD 560
N D
Sbjct: 632 NRNLD 636
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 134 bits (325), Expect = 3e-32
Identities = 133/472 (28%), Positives = 218/472 (46%), Gaps = 51/472 (10%)
Query: 91 EKQKEFKVLGSSDFQKKSKVQRILPYWLSHPTVVSRDLNELSCPVEEQE----------W 140
EK+K+ + S +K + + V S++ NE S EE E W
Sbjct: 65 EKRKKDQKEASEKKKKGKRTSPTIEMTSLGSKVTSKNYNEFSTLEEEDEHNSHGVDVSAW 124
Query: 141 LH----PVIKSTLLSEGITKLFPVQNQVVPFILNEHTLPKLFQPRDVCISAPTGSGKTLS 196
H P + +L G +K P+Q+ V+P E ++ D+ A TGSGKTL+
Sbjct: 125 AHFSLSPEMLGSLSKAGFSKPMPIQSLVIP----EASIGF-----DIIGKADTGSGKTLA 175
Query: 197 FVIPIVQLLMKDVGCK-IRALVVLPVQELAAQVAKVFKKYCNRTHLKVALLSGSVPFQQE 255
F IPI++ +++V K ++ALVV P +ELA Q+ + F+ +++V ++G + Q++
Sbjct: 176 FGIPILEHCLRNVDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQ 235
Query: 256 QQELVRFTESVGWVSKVEIIVCTAGRLVEHLKTTE-GFNLQHLKFLVIDEADRIMDNIQN 314
Q+ L + ++V T GRL + N + +K LV+DEADR++
Sbjct: 236 QRLLNKHPH---------VVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHF 286
Query: 315 DWLYHVDHHIKQGSELMTGKVQSLNWKNVSKQKLAPQ-KLLFSATLSQDPEKLEQWGLFQ 373
+ L + + G+ + T + Q+ + + L + K +++ + L +
Sbjct: 287 EELSKLLEIL--GNPMHTQR-QTFIFSATFDEGLQQRLKKNMKGNITEKYNSPMENMLKE 343
Query: 374 PKLFSAATNECFEDEDQIRKYATPAELKEHYVVCEAENKPLVLYNFLVEQKWDKVLCFTN 433
+ F F D + + A + + E + C K L LY +L+ + K + F N
Sbjct: 344 VRFFGKPK---FLDANP--QSAVASRVLEGLIECAPAEKDLYLY-YLIMRYPGKTMVFAN 397
Query: 434 AAETTHRLTVLLNTWACKGLKVAE--LSAALDRSMRENVLKKFMLSEIDVLISTDALARG 491
E R+T LN LKV L A LD+ R L+KF + VL+ TD ARG
Sbjct: 398 GIEDIKRITPFLNE-----LKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARG 452
Query: 492 IDIPDCNYVISYDPPRNIKTYIHRVGRTGRAGKIGKAVTVLLPSQISLFKDL 543
IDIP +VI Y P Y+HR GRT RA + G ++ + P ++S K L
Sbjct: 453 IDIPSVTHVIHYHVPHTADMYVHRSGRTARANEDGVSILMCGPKELSQLKRL 504
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 128 bits (310), Expect = 2e-30
Identities = 110/387 (28%), Positives = 180/387 (46%), Gaps = 50/387 (12%)
Query: 169 LNEHTLPKLFQPRDVCISAPTGSGKTLSFVIPIVQLLMKDVGCKIRALVVLPVQELAAQV 228
+ + +P + RD+ APTGSGKT++++ PI+Q L V RA++V P +EL Q+
Sbjct: 72 IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQI 131
Query: 229 AKVFKKYCNRTHLKVALLSGSVPFQQEQQELVRFTESVGWVSKVEIIVCTAGRLVEHLKT 288
+ +K T LK+ LS S QE+ +R K ++ + T RLV+ ++T
Sbjct: 132 YRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLR--------EKYDMCIGTPMRLVQAIQT 183
Query: 289 TEGFNLQHLKFLVIDEADRIMDNIQNDWLYHVDHHIKQGSELMTGKVQSLNWKNVSKQKL 348
G + + ++F V+DEADR+ + I+Q +++ S N+ K
Sbjct: 184 --GLSFEKVEFFVMDEADRLFE----------PGFIEQTDHILSACTSS----NICKS-- 225
Query: 349 APQKLLFSATLSQDPEKLEQWGLFQPKLFSAATNECFEDEDQIRKYATPAELKEHYVVCE 408
LFSAT+ E+L + P + D + + +
Sbjct: 226 -----LFSATIPSRVEELAKVVTVDPIRIIVGLKDAATDS-----------IDQRLLFVG 269
Query: 409 AENKPLVLYNFLVE--QKWDKVLCFTNAAETTHRLTVLLNTWACKGLKVAELSAALDRSM 466
++ +V+ ++ + +V+ F E R L + V + L ++
Sbjct: 270 SDTSKIVILRQMISNGELKPRVVIFVQDIE---RAKALYTELLFDEIHVGVIHGELPQAK 326
Query: 467 RENVLKKFMLSEIDVLISTDALARGIDIPDCNYVISYDPPRNIKTYIHRVGRTGRAGKIG 526
RE L KF EI VLI+TD LARGID VI++D P+++ +YIHR+GRTGRAG G
Sbjct: 327 REEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTG 386
Query: 527 KAVTVLLPSQ---ISLFKDLIKAGGKE 550
+AVT I L ++++ G E
Sbjct: 387 QAVTFFTKEDGEYIKLIAGVMRSSGCE 413
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 128 bits (308), Expect = 3e-30
Identities = 103/379 (27%), Positives = 182/379 (48%), Gaps = 44/379 (11%)
Query: 166 PFILNEHTLPKLFQPRDVCISAPTGSGKTLSFVIPIVQLLMKDVGCKIRALVVLPVQELA 225
P + E + ++ + R+ A TGSGKT +F +PI++ KD I AL++ P +ELA
Sbjct: 30 PTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWSKDPS-GIFALILTPTRELA 88
Query: 226 AQVAKVFKKYCNRTHLKVALLSGSVPFQQEQQELVRFTESVGWVSKVEIIVCTAGRLVEH 285
Q+ + F +LK AL+ G + +++R +S+ + ++V T GRL +
Sbjct: 89 IQIDEQFAALGANLNLKHALIVGGM-------DMIR--QSIDLSKRPHVVVATPGRLADL 139
Query: 286 LKTTEG---FNLQHLKFLVIDEADRIMDNIQNDWLYHVDHHIKQGSELMTGKVQSLNWKN 342
+++ L+ +KFLV+DEADR++ D L + + T
Sbjct: 140 IRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPASEDRQT---------- 189
Query: 343 VSKQKLAPQKLLFSATLSQDPEKLEQWGLFQPKLFSAATNECFEDEDQIRKYATPAELKE 402
LLF+AT++ +L+ +QP+ + +E E + P+ L++
Sbjct: 190 ----------LLFTATVTDAIRQLK----YQPQKNNKPPLWLYEVETD--NISVPSTLQQ 233
Query: 403 HYVVCEAENKPLVLYNFLV--EQKWDKVLCFTNAAETTHRLTVLLNTWACKGLKVAELSA 460
Y+ ++ + L + L E + F N T + +L L+V EL +
Sbjct: 234 SYIFVSSQVREAYLVHLLTIPENAKKSAIIFVNRTRTAELIYSILRLLE---LRVTELHS 290
Query: 461 ALDRSMRENVLKKFMLSEIDVLISTDALARGIDIPDCNYVISYDPPRNIKTYIHRVGRTG 520
+ + R N L +F +L++TD +RG+DIP VI++D PR+ YIHRVGRT
Sbjct: 291 EMVQRERINSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTA 350
Query: 521 RAGKIGKAVTVLLPSQISL 539
RAG+ G++++++ + L
Sbjct: 351 RAGRSGESISIVTERDVDL 369
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 127 bits (306), Expect = 5e-30
Identities = 110/398 (27%), Positives = 180/398 (45%), Gaps = 51/398 (12%)
Query: 166 PFILNEHTLPKLFQPRDVCISAPTGSGKTLSFVIPIVQLLMKDVGCKIR----ALVVLPV 221
P + +P + RDV A TGSGKT++F++P+ + + K A+++ P
Sbjct: 441 PTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPT 500
Query: 222 QELAAQVAKVFKKYCNRTHLKVALLSGSVPFQQEQQELVRFTESVGWVSKVEIIVCTAGR 281
+ELA Q+ + K + +++ G P + + +L R EI+VCT GR
Sbjct: 501 RELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKR---------GAEIVVCTPGR 551
Query: 282 LVEHLKTTEG--FNLQHLKFLVIDEADRIMDNIQNDWLYHVDHHIKQGSELMTGKVQSLN 339
+++ L G NL +LV+DEADR+ D G E ++ +N
Sbjct: 552 MIDVLSANAGRVTNLHRCTYLVLDEADRMFD---------------LGFEPQVMRI--IN 594
Query: 340 WKNVSKQKLAPQKLLFSATLSQDPEKLEQWGLFQPKLFSAATNECFEDEDQIRKYATPAE 399
N+ + Q +LFSAT + E L + L +P + E + P E
Sbjct: 595 --NIRPDR---QTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQIVEVRPEE 649
Query: 400 LKEHYVVCEAENKPLVLYNFLVEQKWD-KVLCFTNAAETTHRLTVLLNTWACKGLKVAEL 458
K ++ L L L + D + L F + E+ LL+ +G +
Sbjct: 650 SKF--------SRLLELLGELYNNQLDVRTLVFVDRQESAD---ALLSDLMKRGYTSNSI 698
Query: 459 SAALDRSMRENVLKKFMLSEIDVLISTDALARGIDIPDCNYVISYDPPRNIKTYIHRVGR 518
D+ R++ + + DVLI+T +ARG+D+ V++YD P +++ Y+HRVGR
Sbjct: 699 HGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGR 758
Query: 519 TGRAGKIGKAVTVLLPSQISLFKDLIKA--GGKEEIPE 554
TGRAG G AVT + P Q D+ KA K+ +P+
Sbjct: 759 TGRAGHTGVAVTFITPEQEKYAVDIAKALKMSKQPVPK 796
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 119 bits (287), Expect = 1e-27
Identities = 105/417 (25%), Positives = 187/417 (44%), Gaps = 39/417 (9%)
Query: 150 LSEGITKLFPVQNQVVPFILNEHTLPKLFQPRDVCISAPTGSGKTLSFVIPIVQLLMK-- 207
L + K+ N P + +P L Q +D+ A TGSGKT +F+IP++ + K
Sbjct: 256 LPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLP 315
Query: 208 -----DVGCKIRALVVLPVQELAAQVAKVFKKYCNRTHLKVALLSGSVPFQQEQQELVRF 262
++ A+V+ P +ELA Q+ K+ + + G F+++ F
Sbjct: 316 PLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQS-----F 370
Query: 263 TESVGWVSKVEIIVCTAGRLVEHLKTTEGFNLQHLKFLVIDEADRIMD-NIQNDWLYHVD 321
S G I+V T GRL++ L+ F L ++V+DEADR++D ++D +
Sbjct: 371 QMSQG----AHIVVATPGRLLDCLERRL-FVLSQCTYVVMDEADRMLDMGFEDDVNKILS 425
Query: 322 HHIKQGSELMTGKVQSLNWKNVSKQKLAPQKLLFSATLSQDPEKLEQWGLFQPKLFSAAT 381
+ G + + + S++ Q ++FSATL L + L +P + +
Sbjct: 426 SLPSSNASEKDGSILATANSSSSRR----QTIMFSATLPPRVANLAKSYLIEPVMLTIGN 481
Query: 382 NECFEDEDQIRKYATPAELKEHYVVCEAENKPLVLYNFLVEQKWDK-VLCFTNAAETTHR 440
+ D++ + ++ + K + L ++ ++ F N
Sbjct: 482 --IGQAVDRVEQRVE--------MISDDSKKWRRVEEILESNRFSPPIIIFVNLKRNIEA 531
Query: 441 LTVLLNTWACKGLKVAELSAALDRSMRENVLKKFMLSEIDVLISTDALARGIDIPDCNYV 500
+ LN G L + + RE +++ D+L++TD RGIDIP+ + V
Sbjct: 532 IAKQLNAI---GWHAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLV 588
Query: 501 ISYDPPRNIKTYIHRVGRTGRAGKIGKAVTVLLPSQISLFKD---LIKAGGKEEIPE 554
++Y+ ++I+ Y HR+GRTGRAGK G A+T L P ++ D L+ K IP+
Sbjct: 589 LNYNMAKSIEDYTHRIGRTGRAGKSGTAITFLGPEDTDVYYDLRVLLSRSAKAHIPD 645
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 119 bits (286), Expect = 1e-27
Identities = 114/430 (26%), Positives = 204/430 (47%), Gaps = 55/430 (12%)
Query: 162 NQVVPFILNEHTLPKLFQP--RDVCISAPTGSGKTLSFVIPIVQLLM---KDVGCK---I 213
N P + LP L +D I A TGSGKTL++++PIVQ L+ K++ + I
Sbjct: 158 NISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGI 217
Query: 214 RALVVLPVQELAAQVAKVFKKYCNRTHLKVALLSGSVPFQQEQQELVRFTESVGWVSKVE 273
A+++ P +EL Q+ V K N + + ++++ E R + V
Sbjct: 218 YAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVN------ 271
Query: 274 IIVCTAGRLVEHLKTTEGFNLQHLKFLVIDEADRIMDNIQNDWLYHVDHHIKQGSELMTG 333
I++ T GRL +HL+ TE ++ ++++V+DE DR+MD + L + +++ S ++
Sbjct: 272 ILIGTPGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIK- 330
Query: 334 KVQSLNWKNVSKQKLAPQKLLFSATLSQDPEKLEQWGLFQPKLFSAA----TNECFED-- 387
K S+ + V+ +L SAT+ ++L L ++ TN+ +
Sbjct: 331 KDLSIPSRKVT--------MLCSATMKDTVKRLSDSALKDALYLKSSIVEETNDGYSQAP 382
Query: 388 EDQIRKY-ATPAELKEHYVVCEAEN-----KPLVLY---NFLVEQKWDKVLCFTNAAETT 438
E +++Y P +L+ +V + K ++++ + V+ ++ C NA E
Sbjct: 383 EQLLQRYVVVPPKLRLVSLVALLRSHVRSYKKIIIFLSCSDSVDFHFEAFRCAINADEME 442
Query: 439 HRL--------TVLLNTWACK---GLKVAELSAALDRSMRENVLKKFMLSE---IDVLIS 484
+ ++ N A + V L +L + +R + L F SE +L+
Sbjct: 443 EAVKEKPDSEGDIISNAPALRIDGKSNVYRLHGSLSQQIRTSTLNLFSSSEDSGSHILLC 502
Query: 485 TDALARGIDIPDCNYVISYDPPRNIKTYIHRVGRTGRAGKIGKAVTVLLPSQ---ISLFK 541
TD ARG+D+P+ + V+ YD P + Y+HR+GRT RAG G A+ LLP + I+L K
Sbjct: 503 TDVAARGLDLPNVDLVVQYDAPFSTDDYLHRIGRTARAGHNGAAIMFLLPKESEYINLLK 562
Query: 542 DLIKAGGKEE 551
+ A E+
Sbjct: 563 SSVSANILEQ 572
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 115 bits (277), Expect = 2e-26
Identities = 123/444 (27%), Positives = 191/444 (43%), Gaps = 47/444 (10%)
Query: 136 EEQEWLHPVIKSTLLSEGITKLFPVQNQVVPFILNEHTLPKLFQPRDVCISAPTGSGKTL 195
+ E L P+++ L ++N P + T P L RDV A TGSGKT+
Sbjct: 158 KSSENLLPILQFDELDVSAKLREGLKNYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTV 217
Query: 196 SFVIPIVQLL--MKDVGCKIRALVVLPVQELAAQVAKVFKKYCNRTHLKVALLSGSVPFQ 253
+F IP +Q L + D R LVV P +ELA Q + T+LK ++ G P +
Sbjct: 218 AFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAP-K 276
Query: 254 QEQQELVRFTESVGWVSKVEIIVCTAGRLVEHLKTTEGFNLQHLKFLVIDEADRIMDNIQ 313
EQ + +I+ T GRL++ L + + +LV+DEADR++D
Sbjct: 277 SEQARAAK---------NASVIIGTPGRLLD-LINDGSIDCSQVGYLVLDEADRMLDTGF 326
Query: 314 NDWLYHVDHHIKQGSELMTGKVQSLNWKNVSKQKLAPQKLLFSATLSQDPEKLEQWGLFQ 373
+ ++ H + +N S+Q + FSAT + L L
Sbjct: 327 EQDIRNIISHTPDPT------------RNGSRQTV-----FFSATWPESVRALAATFLKD 369
Query: 374 PKLFSAATNECFEDED--QIRKYATPAELKEHYVVCEAENKPLVLYNFLVEQKWDKVLCF 431
P + ++E ++ QI + KE + +N L+ + K DK+L F
Sbjct: 370 PVKITIGSDELAASQNITQIVEILDDPRSKERML----DN--LLRKHLSSGGKDDKILIF 423
Query: 432 TNAAETTHRLTVLLNTWACKGLKVAELSAALDRSMRENVLKKFMLSEIDVLISTDALARG 491
+ R+ L + V + + + R L F + VL++TD ARG
Sbjct: 424 VLYKKEAARVEGTL----ARKYNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARG 479
Query: 492 IDIPDCNYVISYDPPRNIKTYIHRVGRTGRAGKIGKAVTVLLPSQISLFKDLIKA--GGK 549
+DIP VI+ P I+ Y+HR+GRTGRA G A+T P S +L+ K
Sbjct: 480 LDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQDKSHAGELVNVLRQAK 539
Query: 550 EEIPE--IKINTDVIDRLFESYAS 571
++IPE K T V +L +Y S
Sbjct: 540 QDIPEGLFKFGTAVKPKL-NAYGS 562
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 104 bits (249), Expect = 4e-23
Identities = 102/399 (25%), Positives = 178/399 (44%), Gaps = 62/399 (15%)
Query: 166 PFILNEHTLPKLFQPRDVCISAPTGSGKTLSFVIPIVQLLM----------KDVGCKIR- 214
P + ++++P + RD+ A TGSGKT F+ PI+ L +D G R
Sbjct: 192 PTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRP 251
Query: 215 ------ALVVLPVQELAAQVAKVFKKYCNRTHLKVALLSGSVPFQQEQQELVRFTESVGW 268
L++ P +EL Q+ + +K+C R+ ++ + G + + +++ +
Sbjct: 252 RKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQ------- 304
Query: 269 VSKVEIIVCTAGRLVEHLKTTEGFNLQHLKFLVIDEADRIMDNIQNDWLYHVDHHIKQGS 328
+++ T GRLV+ + +L ++KFLV+DEADR++D + H+
Sbjct: 305 --GCDLLSATPGRLVDLIDRGR-ISLANIKFLVLDEADRMLDMGFEPQIRHI-------- 353
Query: 329 ELMTGKVQSLNWKNVSKQKLAPQKLLFSATLSQDPEKLEQWGLFQPKLFSAATNECFEDE 388
V+ + +V ++ Q L+FSAT +D + L + L S
Sbjct: 354 ------VEGADMTSVEER----QTLMFSATFPRDIQLLARDFLKDYVFLSVG-------- 395
Query: 389 DQIRKYATPAELKEHYVVCEAENKPLVLYNFLVEQKWDKV-LCFTNAAETTHRLT-VLLN 446
R +T + + V E K L + L + + L F LT LLN
Sbjct: 396 ---RVGSTSENITQKVVHVEDSEKRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLN 452
Query: 447 TWACKGLKVAELSAALDRSMRENVLKKFMLSEIDVLISTDALARGIDIPDCNYVISYDPP 506
+ + + RE L+ F ++++T +RG+DIP+ +VI+YD P
Sbjct: 453 S----NFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLP 508
Query: 507 RNIKTYIHRVGRTGRAGKIGKAVTVLLPSQISLFKDLIK 545
+I Y+HR+GRTGRAG G+AV + + K+LI+
Sbjct: 509 TDIDDYVHRIGRTGRAGNTGQAVAFFNRNNKGIAKELIE 547
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 97.1 bits (231), Expect = 6e-21
Identities = 100/397 (25%), Positives = 176/397 (44%), Gaps = 43/397 (10%)
Query: 166 PFILNEHTLPKLFQPRDVCISAPTGSGKTLSFVIPIVQLLMKDVGCKIRALVVLPVQELA 225
P + + +P+ DV A +G GKT FV+ +Q + + V ++ LV+ +ELA
Sbjct: 74 PSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQI-EPVDGEVSVLVLCHTRELA 132
Query: 226 AQVAKVFKKYCNRT-HLKVALLSGSVPFQQEQQELVRFTESVGWVSKVEIIVCTAGRLVE 284
Q+ + ++ ++ A+ G + +Q+ + ++S I+V T GRL
Sbjct: 133 FQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSP------HIVVATPGRL-N 185
Query: 285 HLKTTEGFNLQHLKFLVIDEADRIMDNIQNDWLYHVDHHIKQGSELMTGKVQSLNWKNVS 344
L + + +K V+DE D++++++ M +Q + ++
Sbjct: 186 ALVREKILKVNSVKHFVLDECDKLLESVD-----------------MRRDIQEV-FRATP 227
Query: 345 KQKLAPQKLLFSATLSQDPEKLEQWGLFQPKLFSAATNECFEDEDQIRKYATPAELKEHY 404
QK Q ++FSATLS + + K F E + D++ T L++HY
Sbjct: 228 PQK---QVMMFSATLSNEIRPI-------CKKFMQNPLEIYVDDET---KLTLHGLQQHY 274
Query: 405 VVCEAENKPLVLYNFLVEQKWDKVLCFTNAAETTHRLTVLLNTWACKGLKVAELSAALDR 464
V E + K + + L ++++V+ F + + L LL C + + L +
Sbjct: 275 VKLEEKAKNRKINDLLDSLEFNQVVIFVKSVSRANELDRLLRE--CNFPSIC-IHGGLPQ 331
Query: 465 SMRENVLKKFMLSEIDVLISTDALARGIDIPDCNYVISYDPPRNIKTYIHRVGRTGRAGK 524
R K F + + ++TD RGIDI N VI+YD P + +Y+HRVGR GR G
Sbjct: 332 EERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGT 391
Query: 525 IGKAVTVLLPSQISLFKDLIKAGGKEEIPEIKINTDV 561
G A+T + S D I+ + I E+ DV
Sbjct: 392 KGLAITFSSSEEDSQILDKIQERFEVNITELPDEIDV 428
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 371 LFQPKLFSAATNECFEDEDQIRKYATPAELKEHYVVCEAEN 411
L +P+L A T+ FE ++++ P + V+C+A++
Sbjct: 57 LLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKS 97
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 90.6 bits (215), Expect = 5e-19
Identities = 97/377 (25%), Positives = 175/377 (46%), Gaps = 67/377 (17%)
Query: 166 PFILNEHTLPKLFQ--PRDVCISAPTGSGKTLSFVIPIVQLLMKDVGCKIRALVVLPVQE 223
P + E LP L PR++ + +G+GKT +F + ++ + V K +A+ + P +E
Sbjct: 137 PSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVP-KPQAICLAPSRE 195
Query: 224 LAAQVAKVFKKYCNRTHLKVAL-LSGSVPFQQEQQELVRFTESVGWVSKVEIIVCTAGRL 282
LA Q+ V + T +K A + SVP G +I++ T G +
Sbjct: 196 LARQIMDVVTEMGKYTEVKTAFGIKDSVP--------------KGAKIDAQIVIGTPGTV 241
Query: 283 VEHLKTTEGFNLQHLKFLVIDEADRIMDNIQNDWLYHVDHHIKQGSELMTGKVQSLNWKN 342
++ +K + + + +K V+DEAD ++D +QG + +++ L +N
Sbjct: 242 MDLMKRRQ-LDARDIKVFVLDEADNMLD--------------QQGLGDQSMRIKHLLPRN 286
Query: 343 VSKQKLAPQKLLFSATLSQDPEKLEQWGLFQPKLFSAATNECFEDEDQIRKYATPAELKE 402
Q +LFSAT S+ EK + F+ NE +++ + +K+
Sbjct: 287 T-------QIVLFSATFSERVEKYAE-------RFAPNANEIRLKTEEL----SVEGIKQ 328
Query: 403 HYVVCEAENKPLVLYNFLVEQKW----DKVLCFTNAAETTHRLTVLLNTWACKGLKVAEL 458
Y+ C++E YN LVE + + F +T + G VA L
Sbjct: 329 LYMDCQSEEHK---YNVLVELYGLLTIGQSIIFCKKKDTAEEIA---RRMTADGHTVACL 382
Query: 459 SAALDRSMRENVLKKFMLSEIDVLISTDALARGIDIPDCNYVISYDPP------RNIKTY 512
+ L+ + R+ ++ F + VL++T+ +ARGID+ N V++YD P + +TY
Sbjct: 383 TGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTY 442
Query: 513 IHRVGRTGRAGKIGKAV 529
+HR+GRTGR G++G ++
Sbjct: 443 LHRIGRTGRFGRVGVSI 459
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 89.4 bits (212), Expect = 1e-18
Identities = 88/379 (23%), Positives = 164/379 (43%), Gaps = 48/379 (12%)
Query: 166 PFILNEHTLPKLFQPRDVCISAPTGSGKTLSFVIPIVQLLMKDVGCKIRALVVLPVQELA 225
P + + ++ + RDV A +G+GKT +F I I+Q + V +AL++ P +ELA
Sbjct: 44 PSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIDLSVR-DTQALILSPTRELA 102
Query: 226 AQVAKVFKKYCNRTHLKVALLSGSVPFQQEQQELVRFTESVGWVSKVEIIVCTAGRLVEH 285
Q+ V + +++ G + ++L G ++ T GR+ +
Sbjct: 103 VQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKL-----DYGQ----HVVSGTPGRVTDM 153
Query: 286 LKTTEGFNLQHLKFLVIDEADRIMDNIQNDWLYHVDHHIKQGSELMTGKVQSLNWKNVSK 345
++ +++K L++DEAD +++ + +Y + ++ G+
Sbjct: 154 IRR-RNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGT----------------- 195
Query: 346 QKLAPQKLLFSATLSQDPEKLEQWGLFQPKLFSAATNECFEDEDQIRKYATPAELKEHYV 405
Q ++ SATL QD L F+ D++ T LK++++
Sbjct: 196 -----QVVVVSATLPQDV-------LEMTNKFTTNPVRILVKRDEL----TLEGLKQYFI 239
Query: 406 VCEAEN-KPLVLYNFLVEQKWDKVLCFTNAAETTHRLTVLLNTWACKGLKVAELSAALDR 464
E E K L + + + F N+ LT + V + + +
Sbjct: 240 AVEKEEWKFDTLCDLYDTLTITQAVIFCNSRRKVDWLTEKMRE---ANFTVTSMHGEMPQ 296
Query: 465 SMRENVLKKFMLSEIDVLISTDALARGIDIPDCNYVISYDPPRNIKTYIHRVGRTGRAGK 524
R+ +++ F VLI TD ARGID+ + VI+YD P N + YIHR+GR+GR G+
Sbjct: 297 KERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGR 356
Query: 525 IGKAVTVLLPSQISLFKDL 543
G A+ + + + +D+
Sbjct: 357 KGVAINFVTNEDVRILRDI 375
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 82.2 bits (194), Expect = 2e-16
Identities = 53/146 (36%), Positives = 78/146 (53%), Gaps = 11/146 (7%)
Query: 166 PFILNEHTLPKLFQPRDVCISAPTGSGKTLSFVIPIVQLLMKDV-GCKIRALVVLPVQEL 224
P + T+P L + RDV A TGSGKT +FVIP+++ L + RAL++ P +EL
Sbjct: 92 PTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNREL 151
Query: 225 AAQVAKVFKKYCNRTHLKVALLSGSVPFQQEQQELVRFTESVGWVSKVEIIVCTAGRLVE 284
A Q KV K + T L+ + G V +EQ L+ K +I+V T GR +
Sbjct: 152 ALQTVKVVKDFSKGTDLRSVAIVGGVSL-EEQFSLLS--------GKPDIVVATPGRFL- 201
Query: 285 HLKTTEGFNLQHLKFLVIDEADRIMD 310
HLK L ++++V DEADR+ +
Sbjct: 202 HLKVEMKLELSSIEYVVFDEADRLFE 227
Score = 74.5 bits (175), Expect = 4e-14
Identities = 38/107 (35%), Positives = 58/107 (54%)
Query: 437 TTHRLTVLLNTWACKGLKVAELSAALDRSMRENVLKKFMLSEIDVLISTDALARGIDIPD 496
T H + + G V+++ +LD+ R N + F L + ++L+ TD +RGIDIP
Sbjct: 355 TKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPL 414
Query: 497 CNYVISYDPPRNIKTYIHRVGRTGRAGKIGKAVTVLLPSQISLFKDL 543
VI+YD P K ++HRVGRT RAG+ G A +++ DL
Sbjct: 415 LANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLVRAEDAGYLLDL 461
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 75.4 bits (177), Expect = 2e-14
Identities = 42/145 (28%), Positives = 73/145 (50%), Gaps = 4/145 (2%)
Query: 400 LKEHYVVCEAENKPL-VLYNFLVEQKWDKVLCFTNAAETTHRLTVLLNTWACKGLKVAEL 458
+K+ YV E E L L + + + F N LT L + V+ +
Sbjct: 232 IKQFYVAVEKEEWKLDTLCDLYETVTVTQAVIFCNTRRKVDWLTEQLTE---RDFTVSSM 288
Query: 459 SAALDRSMRENVLKKFMLSEIDVLISTDALARGIDIPDCNYVISYDPPRNIKTYIHRVGR 518
+D++ R+ ++ +F +LI+TD LARGID+ + VI+YD P N + YIHR+GR
Sbjct: 289 HGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGR 348
Query: 519 TGRAGKIGKAVTVLLPSQISLFKDL 543
GR G+ G ++ + + + +++
Sbjct: 349 GGRFGRKGVSINFVTNDDVRMMREI 373
Score = 48.0 bits (109), Expect = 4e-06
Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 13/156 (8%)
Query: 166 PFILNEHTLPKLFQPRDVCISAPTGSGKTLSFVIPIVQLLMKDVGCK-IRALVVLPVQEL 224
P + + + + RDV A +G+GKT +F I ++Q + D K +AL++ P +EL
Sbjct: 42 PSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKI--DTSLKQCQALILAPTREL 99
Query: 225 AAQVAKVFKKYCNRTHLKVALLSGSVPFQQEQQELVRFTESVGWVSKVEIIVCTAGRLVE 284
A Q+ KV + +++ G LVR + + V ++V T GR V
Sbjct: 100 AQQIQKVVVALGDLMNVECHACIGGT--------LVR-DDMAALQAGVHVVVGTPGR-VH 149
Query: 285 HLKTTEGFNLQHLKFLVIDEADRIMDNIQNDWLYHV 320
+ ++ V+DEAD ++ D +Y +
Sbjct: 150 DMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDI 185
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 73.7 bits (173), Expect = 7e-14
Identities = 45/167 (26%), Positives = 86/167 (51%), Gaps = 5/167 (2%)
Query: 396 TPAELKEHYVVCEAENKPLVLYNFLVEQKWDKVLCFTNAAETTHRLTVLLNTWACKGLKV 455
TP+ L +V K + + L +++K + F ++ + L T+ ++
Sbjct: 227 TPSSLAIQSLVIPPIYKVQCMIHLLCTIEYEKAIVFFSSCASVEYFNSLFLTYKLP-FEI 285
Query: 456 AELSAALDRSMRENVLKKFMLS-EIDVLISTDALARGIDIPDCNYVISYDPPRNIKTYIH 514
L +S R +KF S + VL +TD +RG+DIP+ ++V+ DPP + K++ H
Sbjct: 286 VALHGQQVQSNRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSH 345
Query: 515 RVGRTGRAGKIGKAVTVLLPSQISLFKDLIKAGGKEEIPEIKINTDV 561
R GR GRAG+ G A+ +L + +++L++ ++P +I+T +
Sbjct: 346 RCGRAGRAGRAGVAIVLLNDGREEEYEELLRV---RKVPITRIDTPI 389
Score = 55.6 bits (128), Expect = 2e-08
Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 21/172 (12%)
Query: 145 IKSTLLSEGITKLFPVQNQVVPFILNEHTLPKLFQPRDVCISAPTGSGKTLSFVIPIV-Q 203
+K+ + ++G K+ PVQ +P L +D+ + A TGSGKTL++++P +
Sbjct: 12 LKNAVAAQGFKKMTPVQANAIPLFLKN---------KDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 204 LLMKDVG-CKIRALVVLPVQELAAQVAKVFKKYCNRTHLKVALLSGSVPFQQEQQELVRF 262
+ +D + AL+V P +ELA Q+ V K+ + L G + +
Sbjct: 63 VTRRDTDETGLGALIVAPTRELATQIFNVTKEL---LAYQPDSLDGGKKLVADMYIGGKG 119
Query: 263 TESVGWVSKVE----IIVCTAGRLVEHLKTTEGFNLQHLKFLVIDEADRIMD 310
T + S E +++ T GRL E L + +HL+ L++DEAD ++D
Sbjct: 120 TLTNDLASFREKNPSVVIGTPGRLNEML---SHISSKHLEILILDEADTLID 168
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 73.3 bits (172), Expect = 9e-14
Identities = 83/327 (25%), Positives = 143/327 (43%), Gaps = 51/327 (15%)
Query: 166 PFILNEHTLPKLFQPRDVCISAPTGSGKTLSFVIPIVQLLMKDVGCK-----IRALVVLP 220
P + T+P + +D+ A TGSGKT +++IPI++LL+K I AL+++P
Sbjct: 37 PTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVP 96
Query: 221 VQELAAQVAKVFKKYCNRTHLKVALLSGSVPFQQEQQELVRFTESVGWVSKVEIIVCTAG 280
+ELA QV V +K A S + F + + +I++ T
Sbjct: 97 TRELAQQVYNVLEKL-------TAFCSKHIRFINVATNSSDTVQRPLLLDLPDIVIATPS 149
Query: 281 RLVEHLKTTEGFNLQHLKFLVIDEADRIMDNIQNDWLYHVDHHIKQGSELMTGKVQSLNW 340
R V H+ + L LKFLVIDEAD ++ N+ + + + +G+
Sbjct: 150 RCVVHV-ASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRGT------------ 196
Query: 341 KNVSKQKLAPQKLLFSATLSQDPEKLEQWGLFQPKLFSAATNECFEDEDQIRKYATPAEL 400
Q L SATLS++ L++ P + + E +L
Sbjct: 197 ----------QSFLMSATLSKNIASLQKLVCRNPFILAVKDKE------------ASGKL 234
Query: 401 KEHYVVCEAENKPLVLYNFL-VEQKWDKVLCFTNAAETTHRLTVLLNTWACKGLKVAELS 459
++ V C ++K L+ Y L + K+L F N +RL + L + GLK L+
Sbjct: 235 TQYVVKCSEQDKFLLAYILLKLRLIKGKILIFVNEINRCYRLKLFLEQF---GLKSLVLN 291
Query: 460 AALDRSMRENVLKKFMLSEIDVLISTD 486
+ L + R ++L+++ ++I+TD
Sbjct: 292 SELPVNSRLHILEQYNKGLYQIIIATD 318
Score = 56.0 bits (129), Expect = 1e-08
Identities = 23/47 (48%), Positives = 35/47 (74%)
Query: 488 LARGIDIPDCNYVISYDPPRNIKTYIHRVGRTGRAGKIGKAVTVLLP 534
+ARG+D + V+++D P N K+YIHR+GRT RAGK G A++ ++P
Sbjct: 386 VARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSFVVP 432
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 70.9 bits (166), Expect = 5e-13
Identities = 31/79 (39%), Positives = 47/79 (59%)
Query: 458 LSAALDRSMRENVLKKFMLSEIDVLISTDALARGIDIPDCNYVISYDPPRNIKTYIHRVG 517
L + L + R ++ + F + +L +TD +ARG+D P+ V+ P N YIHR+G
Sbjct: 323 LHSGLTTAQRRSITESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIHRIG 382
Query: 518 RTGRAGKIGKAVTVLLPSQ 536
RTGRAGK G+A +LL +
Sbjct: 383 RTGRAGKTGEAYLILLEQE 401
Score = 62.5 bits (145), Expect = 2e-10
Identities = 48/174 (27%), Positives = 83/174 (47%), Gaps = 20/174 (11%)
Query: 141 LHPVIKSTLLSEGITKLFPVQNQVVPFILNEHTLPKLFQPRDVCISAPTGSGKTLSFVIP 200
L K++L G K+ PVQ +V LNE P + + A TG+GKTL+F++
Sbjct: 45 LSSTFKNSLSRAGFEKMTPVQQRV----LNE-VFPN---EENAVVQAKTGTGKTLAFLLV 96
Query: 201 IVQLLMKDV----GCKIRALVVLPVQELAAQVAKVFKKYCNRTHLKVALLSGSVPFQQEQ 256
+ ++K KI ++++ P +ELA Q+ + +K T ++V+ G +E+
Sbjct: 97 AFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREE 156
Query: 257 QELVRFTESVGWVSKVEIIVCTAGRLVEHLKTTEGFNLQHLKFLVIDEADRIMD 310
+ R +++ T GRL +HL+ ++DEADR+MD
Sbjct: 157 NAIRR--------GNANLLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMD 202
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 69.7 bits (163), Expect = 1e-12
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Query: 420 LVEQKWDKVLCFTNAAETTHRLTVLLNTWACKGLKVAELSAALDRSMRENVLKKFMLSEI 479
+++ + +KVL FT +T L L + A + R+ VL +F +
Sbjct: 364 VLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKA---QDERDWVLNEFRTGKS 420
Query: 480 DVLISTDALARGIDIPDCNYVISYDPPRNIKTYIHRVGRTGRAGKIGKAVTVLLPSQISL 539
++++TD +RGID+ +V +YD P N + Y+HR+GRTGRAG G A T
Sbjct: 421 PIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQ 480
Query: 540 FKDLI 544
++L+
Sbjct: 481 ARELV 485
Score = 66.9 bits (156), Expect = 8e-12
Identities = 47/149 (31%), Positives = 80/149 (53%), Gaps = 14/149 (9%)
Query: 166 PFILNEHTLPKLFQPRDVCISAPTGSGKTLSFVIP-IVQLLMKDV---GCKIRALVVLPV 221
P + + P RD+ + TGSGKTLS+ +P IV + + + G LV+ P
Sbjct: 145 PTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPT 204
Query: 222 QELAAQVAKVFKKYCNRTHLKVALLSGSVPFQQEQQELVRFTESVGWVSKVEIIVCTAGR 281
+ELA Q+ + K+ + ++ + G VP + ++L+R VEI + T GR
Sbjct: 205 RELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIR---------GVEICIATPGR 255
Query: 282 LVEHLKTTEGFNLQHLKFLVIDEADRIMD 310
L++ L + + NL+ + +LV+DEADR++D
Sbjct: 256 LLDMLDSNK-TNLRRVTYLVLDEADRMLD 283
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 64.1 bits (149), Expect = 5e-11
Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 3/131 (2%)
Query: 402 EHYVVCEAENKPLVLYNFLVEQKWDKVLCFTNAAETTHRLTVLLNTWACKGLKVAELSAA 461
++Y + K L + + ++ + F N+ T+R+ +L G A
Sbjct: 258 QYYAFVDESQKVHCLNTLFSKLQINQSIIFCNS---TNRVELLAKKITELGYSCFYSHAK 314
Query: 462 LDRSMRENVLKKFMLSEIDVLISTDALARGIDIPDCNYVISYDPPRNIKTYIHRVGRTGR 521
+ +S R V F L+ +D L RGIDI N VI++D P+N +TY+HR+GR+GR
Sbjct: 315 MLQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR 374
Query: 522 AGKIGKAVTVL 532
G G A++ +
Sbjct: 375 FGHRGLAISFI 385
Score = 59.7 bits (138), Expect = 1e-09
Identities = 40/144 (27%), Positives = 75/144 (52%), Gaps = 11/144 (7%)
Query: 166 PFILNEHTLPKLFQPRDVCISAPTGSGKTLSFVIPIVQLLMKDVGCKIRALVVLPVQELA 225
P + E ++P RD+ A G+GKT +FVIP ++ + KI+ L+++P +ELA
Sbjct: 67 PSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLE-KVDTKKSKIQTLILVPTRELA 125
Query: 226 AQVAKVFKKYCNRTHLKVALLSGSVPFQQEQQELVRFTESVGWVSKVEIIVCTAGRLVEH 285
Q ++V K ++KV + +G + +++R ++ V I+V T GR+++
Sbjct: 126 LQTSQVCKTLGKHMNVKVMVTTGGTTL---RDDIIRLNDT------VHIVVGTPGRVLD- 175
Query: 286 LKTTEGFNLQHLKFLVIDEADRIM 309
L + V+DEAD+++
Sbjct: 176 LAGKGVADFSECTTFVMDEADKLL 199
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 50.4 bits (115), Expect = 7e-07
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 1/104 (0%)
Query: 452 GLKVAELSAALDRSMRENVLKKFMLSEIDVLISTDALARGIDIPDCNYVISYDPPRNIKT 511
GLK A L++ R+ + ++ ++++T A G+D D +VI + P++++
Sbjct: 767 GLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFGMGVDKGDVRFVIHHSFPKSLEG 826
Query: 512 YIHRVGRTGRAGKIGKAVTVLLPSQISLFKDLIKAG-GKEEIPE 554
Y GR GR GK + F+ LI +G G E E
Sbjct: 827 YYQETGRAGRDGKPAHCIMFYSYKDHVTFQKLIMSGDGDAETKE 870
Score = 27.5 bits (58), Expect = 5.7
Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 14/129 (10%)
Query: 181 RDVCISAPTGSGKTLSFVIPIVQLLMKDVGCKIRALVVLPVQELAAQVAKVFKKYCNRTH 240
+DV I PTG GK+L + +P V ++ + LV+ P+ L +K +
Sbjct: 535 KDVFILMPTGGGKSLCYQLPAV---IEGGASRGVTLVISPLLSLMQDQLDHLRK----LN 587
Query: 241 LKVALLSGSVPFQQEQQELVRFTESVGWVSKVEII----VCTAGRLVEHLKTTEGFNLQH 296
+ LSG P E+++++ F + + K+ + + + G + LK+ + +
Sbjct: 588 IPSLPLSGEQP-ADERRQVISFLMAKNVLVKLLYVTPEGLASNGAITRVLKSL--YERKL 644
Query: 297 LKFLVIDEA 305
L +VIDEA
Sbjct: 645 LARIVIDEA 653
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/73 (28%), Positives = 38/73 (52%)
Query: 452 GLKVAELSAALDRSMRENVLKKFMLSEIDVLISTDALARGIDIPDCNYVISYDPPRNIKT 511
G +A + + ++ +K+F E++ LI+T G+DI + + +I YD +
Sbjct: 466 GQSAVRKAAGMSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYDASASPIR 525
Query: 512 YIHRVGRTGRAGK 524
+ R+GRTGR K
Sbjct: 526 MLQRMGRTGRKRK 538
Score = 27.9 bits (59), Expect = 4.3
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 182 DVCISAPTGSGKTLSFVIPIVQLLMKDVGCKIRALVVLPVQELAAQVAKVFKKYCNRTHL 241
+V ++ PTG GKT F+ +V + K + + P + L Q + K
Sbjct: 88 NVLVALPTGLGKT--FIAAVVMMNYLRWFPKSYIVFMAPTKPLVTQQMEACYKITGIPKS 145
Query: 242 KVALLSGSVPFQQEQQ 257
+ A LSG VP Q
Sbjct: 146 QTAELSGHVPVTTRNQ 161
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 43.6 bits (98), Expect = 8e-05
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 467 RENVLKKFMLSEIDVLISTDALARGIDIPDCNYVISYDPPRNIKTYIHRVGR 518
+++ L KF + +VLI+T GID+P CN VI ++ R + Y+ GR
Sbjct: 412 QKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYVQSRGR 463
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 43.2 bits (97), Expect = 1e-04
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 459 SAALDRSMRENVLKKFMLSEIDVLISTDALARGIDIPDCNYVISYDPPRNIKTYIHRVGR 518
S +++ ++ + +F I+ L++T G+DI D + +I YD + I R+GR
Sbjct: 512 STGMNQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSSPIRTIQRMGR 571
Query: 519 TGRAGKIGKAVTVL 532
TGR K GK +L
Sbjct: 572 TGRK-KSGKVFVLL 584
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 34.7 bits (76), Expect = 0.038
Identities = 91/408 (22%), Positives = 165/408 (40%), Gaps = 40/408 (9%)
Query: 169 LNEHTLPKLF-QPRDVCISAPTGSGKTLSFVIPIVQLLMK----DVGCKI---RALVVLP 220
+ H P F ++ + APTG+GKT ++ I+ L K D+ + + + + P
Sbjct: 523 IQSHLYPIAFGTDENILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAP 582
Query: 221 VQELAAQVAKVFKKYCNRTHLKVALLSGSVPFQQEQQELVRFTESVGWVSKVEIIVCTAG 280
++ L ++ F K +++VA L+G Q +Q++ V K +II A
Sbjct: 583 LKALVQEMVNNFSKRLTPYNIRVAELTGD--SQLTKQQISETQIIVTTPEKWDIITRKAN 640
Query: 281 RLVEHLKTTEGFNLQHLKFLVIDEADRIMDNIQNDWLYHVDHHIKQGSELMTGKVQSLNW 340
L ++ + + L+ DE ++++I H + ++Q L+ N+
Sbjct: 641 DL-SYVNLVRLVIIDEV-HLLHDERGPVLESIVARIFRHQEETLEQ-VRLVGLSATLPNY 697
Query: 341 KNV-SKQKLAPQKLL--FSATLSQDPEKLEQWGLFQPKLFS--AATNE-CFEDEDQIRKY 394
+V S + P+K L F +T P K E G+ + F TNE C+E Q
Sbjct: 698 TDVASFLHVDPKKGLFYFDSTYRPCPLKQEFIGITEKTPFKRMQTTNEACYEKVMQ-HAG 756
Query: 395 ATPAELKEHYVVCEAENKPLVLYNFLVEQKWDKVLCFTNAAETTHRLTVLLNTWACKGLK 454
+ H A+ + L E+ +L + A + L ++ + + LK
Sbjct: 757 KNQVLIFVHSRKETAKTARFIRDKALEEETIGHLL--RSDAASREILRAEADSTSDENLK 814
Query: 455 ------VAELSAALDRSMRENVLKKFMLSEIDVLISTDALARGIDIPDCNYVIS----YD 504
A A + R R+ F I VL+ST LA G+++P +I Y
Sbjct: 815 DLLPYGFAIHHAGMRREDRQTSEDLFADGTIQVLVSTATLAWGVNLPAHTVIIKGTQVYS 874
Query: 505 PPRNIKT------YIHRVGRTGRA--GKIGKAVTVLLPSQISLFKDLI 544
P + I T + +GR GR G+ + + S++ + L+
Sbjct: 875 PEKGIWTELSPQDVLQMLGRAGRPQFDTYGEGIIITAHSELQYYLSLM 922
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 34.3 bits (75), Expect = 0.050
Identities = 21/79 (26%), Positives = 36/79 (45%)
Query: 454 KVAELSAALDRSMRENVLKKFMLSEIDVLISTDALARGIDIPDCNYVISYDPPRNIKTYI 513
K+ A R + + ++ +I+T+AL GIDI + VI+ P ++
Sbjct: 586 KIQSYRAGYTVQERRKIESEMFNGKLYGIIATNALELGIDIGSLDAVITIGFPYSLSNLR 645
Query: 514 HRVGRTGRAGKIGKAVTVL 532
+ GR GR K AV ++
Sbjct: 646 QQFGRAGRRNKSSLAVYIV 664
Score = 33.5 bits (73), Expect = 0.087
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 149 LLSEGITKLFPVQNQVVPFILNEHTLPKLFQPRDVCISAPTGSGKTLSFVIPIVQLLMKD 208
L E I L+ +N + + L+ V +S T SGK+L + IPI+Q L++D
Sbjct: 295 LSQELINALYTSRNIEKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSLLED 354
Query: 209 VGCKIRALVVLPVQELAAQVAK 230
+ A V P + LA K
Sbjct: 355 --NQSTAFFVFPTKSLAQDQKK 374
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 33.9 bits (74), Expect = 0.066
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Query: 440 RLTVLLNTWACKGLKVAELSAALDRSMRENVLKKFML--SEIDV-LISTDALARGIDIPD 496
+L +L + + K + A A R++ + F SE+ L+ST A GI++
Sbjct: 899 QLDILEDWFEYKNIAYARFDGASSEMERQSAIDSFNAPNSELSCFLLSTRAGGVGINLAS 958
Query: 497 CNYVISYDPPRNIKTYIHRVGRTGRAGKIGKAVTVLLPSQISLFKDLIKAGGKE 550
+ VI DP N + + R R G+ K + +L ++ S+ + +I+ K+
Sbjct: 959 ADTVIILDPDFNPHQDMQAIARAHRYGQKKKVLVFVLTTRDSVEEKIIQNAQKK 1012
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 33.9 bits (74), Expect = 0.066
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 481 VLISTDALARGIDIPDCNYVISYDPPRNIKTYIHRVGRTGRAGK 524
++I+T A GI+ V+ Y P + Y+ GR GR GK
Sbjct: 1474 IMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGK 1517
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 188 PTGSGKTLSFVIPIVQLLMKDVGCKIRALVVL 219
PTG GK+LSF+IP + + K+ +V L
Sbjct: 1214 PTGGGKSLSFLIPALIEKKRQTPGKVMNMVTL 1245
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 33.9 bits (74), Expect = 0.066
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 481 VLISTDALARGIDIPDCNYVISYDPPRNIKTYIHRVGRTGRAGK 524
++I+T A GI+ V+ Y P + Y+ GR GR GK
Sbjct: 1474 IMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGK 1517
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 188 PTGSGKTLSFVIPIVQLLMKDVGCKIRALVVL 219
PTG GK+LSF+IP + + K+ +V L
Sbjct: 1214 PTGGGKSLSFLIPALIEKKRQTPGKVMNMVTL 1245
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 33.9 bits (74), Expect = 0.066
Identities = 31/147 (21%), Positives = 68/147 (46%), Gaps = 7/147 (4%)
Query: 421 VEQKWDKVLCFTNAAETTHRLTVLLNTWACKGLKVAELSAALDRSMRENVLKKFMLSEID 480
++++ ++L F+ + L +L+T + L + +R++++ +F E D
Sbjct: 936 MKEEGSRILLFSQFTQMLDILEQVLDTLK---ISYVRLDGSTQVEVRQDIIDQFHKEE-D 991
Query: 481 V---LISTDALARGIDIPDCNYVISYDPPRNIKTYIHRVGRTGRAGKIGKAVTVLLPSQI 537
V L+ST A GI++ N VI YD N + R R G++ + + L +
Sbjct: 992 VTVFLLSTKAGGFGINLACANVVILYDCSYNPFDDLQAEDRAHRVGQVREVTVIRLITDN 1051
Query: 538 SLFKDLIKAGGKEEIPEIKINTDVIDR 564
++ + + K + ++ +++D DR
Sbjct: 1052 TIEEYIQKLANTKLALDMSLSSDGKDR 1078
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 33.9 bits (74), Expect = 0.066
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 15 DTHIIEQEAKRLEQLKQRIEERRKAFSVKKS-SDVITLKEEKQTEILPDLPVSTN 68
D+ ++ Q ++LE+LK +E RR+ S K+ + +K E+ T DL + TN
Sbjct: 1071 DSTLLAQAQEKLEKLKVEVERRRRLLSEKEERRKELAIKIEQVTNSCSDLELRTN 1125
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 31.9 bits (69), Expect = 0.26
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 11/136 (8%)
Query: 397 PAELK--EHYVVCEAENKPLVLYNFLVEQKW---DKVLCFTNAAETTHRLTVLLNTWACK 451
P EL+ + + K LVL L + K DK++ +N T L + +
Sbjct: 594 PRELRGRDRNIDSSLSGKMLVLERMLYQIKQETDDKIVLISNYTST---LDLFEQLCRAR 650
Query: 452 GLKVAELSAALDRSMRENVLKKFMLSEIDV---LISTDALARGIDIPDCNYVISYDPPRN 508
G K L ++ + R+ ++ F E D L+S+ A GI++ N +I +DP N
Sbjct: 651 GYKALRLDGTMNVNKRQRLVDTFNDPEKDAFVFLLSSKAGGCGINLIGANRLILFDPDWN 710
Query: 509 IKTYIHRVGRTGRAGK 524
+ R R G+
Sbjct: 711 PAADQQALARVWRDGQ 726
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 31.5 bits (68), Expect = 0.35
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 6/108 (5%)
Query: 426 DKVLCFTNAAETTHRLTVLLNTWACKGLKVAELSAALDRSMRENVLKKFMLSE-IDV-LI 483
D+V+ F+ + T L +L LK + R++++ +F E I+V L+
Sbjct: 778 DRVVLFS---QFTQVLDILQLVMKSLNLKFLRFDGSTQVDFRQDLIDQFYADESINVFLL 834
Query: 484 STDALARGIDIPDCNYVISYDPPRNIKTYIHRVGRTGRAGKIGKAVTV 531
ST A GI++ N VI YD N + R R G+ K VTV
Sbjct: 835 STKAGGFGINLACANMVILYDVSFNPFDDLQAEDRAHRVGQ-KKEVTV 881
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 31.1 bits (67), Expect = 0.46
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 439 HRLTVLLNTWACKGLKVAELSAALDRSMRENVLKKFMLSEIDVLISTDALARGIDIPDCN 498
H L V N + G+ L + S RE +++ F + VL++ L G DIP+ +
Sbjct: 277 HSLKVC-NAFRKLGIDARALFGETNDSERETLIQDFRKKKFPVLVNCMVLTEGTDIPNID 335
Query: 499 YVISYDPPRNIKTYIHRVGR 518
++ P + +GR
Sbjct: 336 CLMIARPTSSPNLLTQMIGR 355
Score = 26.6 bits (56), Expect = 10.0
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 141 LHPVIKSTLLSEGITKLFPVQNQVVPFILNEHTLPKLFQPRDVCISAPTGSGKTLSF 197
L P ST+ KL P Q + + LN K R + +S TGSGKT F
Sbjct: 11 LWPRNGSTIFRRFALKLRPYQEECLSACLNAFDEGK----RRIAVSLATGSGKTALF 63
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/59 (22%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 546 AGGKEEIPEIKINTDVIDRLFESYASAMNTTREKINSELNLKIKNSIEIKRSAKSKIQK 604
A ++++ E+ ++ ++ + +S++ EKIN+E L+I ++K + + +I+K
Sbjct: 203 AAAEQQLQELSVHNQQLEESIKQVSSSIEL--EKINAEQRLQISELEKLKAAQEERIEK 259
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 29.5 bits (63), Expect = 1.4
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 175 PKLF----QPRD-VCISAPTGSGKTLSFVIPIVQLLMKDVGCKIRALVVLPVQELAAQVA 229
P+LF +PR V + P G+GKTL +L ++ V K L+ + V E A V
Sbjct: 678 PELFSQGLKPRSGVLLYGPPGTGKTLLAKAVATELSLEFVSIKGPELLNMYVGESEANVR 737
Query: 230 KVFKKYCN 237
VF+K N
Sbjct: 738 NVFEKARN 745
>SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit
subunit Ker1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 11 DTNDDTHIIEQEAKRLEQLKQRIEERRKAFSVKKSSDVITLKEEKQ 56
+ NDD H+ ++ KRL++ K++ R K + K +D EK+
Sbjct: 100 EENDDLHLDKETKKRLKKEKKKAARREKEEARKAKADTTQGVGEKE 145
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 29.1 bits (62), Expect = 1.9
Identities = 35/134 (26%), Positives = 54/134 (40%), Gaps = 7/134 (5%)
Query: 402 EHYVVCEAENKPL-VLYNFLVEQKWDKVLCFTNAAETTHRLTVLLNTWACKGLKVAELSA 460
+H+ K L + + +Q DK+L F+ TV +G+K +
Sbjct: 859 KHWTTSTKIEKALNAVKEIIKKQPTDKILIFSQFVSFLELFTVPFRQ---EGIKYLMYTG 915
Query: 461 ALDRSMRENVLKKFMLS-EIDVL-ISTDALARGIDIPDCNYVISYDPPRNIKTYIHRVGR 518
L + R L F + + VL IS A G+++ N+VI DP N V R
Sbjct: 916 GLSTAERNQALINFEVDPNVRVLLISLKAGNVGLNLTCANHVIILDPFWNPYIEEQAVDR 975
Query: 519 TGRAGKIGKAVTVL 532
R G+ K V +L
Sbjct: 976 AHRIGQ-DKPVNIL 988
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 29.1 bits (62), Expect = 1.9
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 12 TNDDTHIIEQEAKRL--EQLKQRIEERRKAFSVKKSSDVITLKEEKQT 57
++D E+E K+ E+LKQ IE R+ KK + I EEK+T
Sbjct: 26 SHDQFEETEEEIKKRSPEELKQAIEALREKAKEKKEKERILALEEKKT 73
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 28.7 bits (61), Expect = 2.5
Identities = 19/76 (25%), Positives = 38/76 (50%)
Query: 482 LISTDALARGIDIPDCNYVISYDPPRNIKTYIHRVGRTGRAGKIGKAVTVLLPSQISLFK 541
L+ST A GI++ + VI +D N + + + R R G+ + L S+ ++ +
Sbjct: 763 LLSTRAGGLGINLMTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLLSKDTIEE 822
Query: 542 DLIKAGGKEEIPEIKI 557
D+++ ++ I E I
Sbjct: 823 DVLERARRKMILEYAI 838
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 15 DTHIIEQEAKRLEQLKQRIEERRKAFSVKKSSDVITLKEEK 55
D ++E KR+EQL++ IEE R+ + + + K+ K
Sbjct: 26 DEQAHKEEMKRVEQLRREIEEERQLLELHRLQEAAGGKKRK 66
>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 565
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/54 (24%), Positives = 24/54 (44%)
Query: 481 VLISTDALARGIDIPDCNYVISYDPPRNIKTYIHRVGRTGRAGKIGKAVTVLLP 534
V ++ + RG+ +P ++ + Y H GR G G+ GK ++P
Sbjct: 474 VFVANPSEIRGLHLPSITHIFHLWSTFSGVAYQHIAGRLGAMGQTGKIFNFIIP 527
>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 342
Score = 28.7 bits (61), Expect = 2.5
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 18 IIEQEAKRLEQLKQRIEERRKAFSVKKSSDVITLKEEKQTEILPDLPVSTN 68
I ++ A LK + ++ K+SS I K+EK+T + P PV TN
Sbjct: 71 IADENACEEPVLKIKSVSSTESEEEKESSTEIGEKQEKETHLEPKTPVQTN 121
>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 380
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 302 IDEADRIMDNIQNDWLYHVDHHIKQGSELMTGKVQSLNWKN 342
+ EADR I DW Y + +E++ G+ L WK+
Sbjct: 261 VKEADRSKYPIPEDWPYEDARRLFLDAEVLPGEEIELKWKS 301
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 27.9 bits (59), Expect = 4.3
Identities = 33/151 (21%), Positives = 63/151 (41%), Gaps = 8/151 (5%)
Query: 412 KPLVLYNFLVEQKWD--KVLCFTNAAETTHRLTVLLNTWACKGLKVAELSAALDRSMREN 469
K ++L L K D +VL F+ + L +L + +G L + S+R
Sbjct: 705 KMVLLDKLLQRLKHDGHRVLIFS---QMVRMLNILGEYMSLRGYNYQRLDGTIPASVRRV 761
Query: 470 VLKKFMLSEID---VLISTDALARGIDIPDCNYVISYDPPRNIKTYIHRVGRTGRAGKIG 526
+ F + L+ST A GI++ + VI +D N + + + R R G+
Sbjct: 762 SIDHFNAPDSPDFVFLLSTRAGGLGINLNTADTVIIFDSDWNPQADLQAMARAHRIGQKN 821
Query: 527 KAVTVLLPSQISLFKDLIKAGGKEEIPEIKI 557
S+ ++ +D+++ ++ I E I
Sbjct: 822 HVNVYRFLSKDTVEEDILERARRKMILEYAI 852
>SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 535
Score = 27.9 bits (59), Expect = 4.3
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 353 LLFSATLSQDPEKLEQ----WGLFQPKLFSAATNECFEDEDQIRKYATPAELKEHYVVCE 408
LLF+A S D + + Q WG+ QP+LF+ DE+Q KE +
Sbjct: 382 LLFTAAYSLDKKSILQVMDAWGIGQPELFANRMLNIPMDEEQPHTGEKIISKKEAFQQQL 441
Query: 409 AENKPLV 415
AE K +
Sbjct: 442 AERKKFI 448
>SPAC3H1.03 |mug151||transcriptional regulator, HCNGP-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 549 KEEIPEIKINTDVIDRLFESYASAMNTTREKINSELNLKIKNSIEIK 595
+E+ + N D+ R E + N+ + ++++EL KIK I++K
Sbjct: 11 EEQTSLVNENNDIKGRSEEPHWKIPNSPKAEVDTELEKKIKQFIKLK 57
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 531 VLLPSQISLFKDLIKAGGKEEIPEIKINTDVIDRLFESY 569
V LP +S KD+I AGG++E E+ +++D L Y
Sbjct: 555 VKLPFSVSQ-KDMIIAGGRKEFLELLDKFEMLDMLDSGY 592
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 967
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 529 VTVLLPSQISLFKDLIKAGGKEEIPEIKIN 558
VT +P + L L++A G E +P+ +N
Sbjct: 650 VTEFIPYVLQLLSQLVEASGNEPLPDFVVN 679
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/61 (24%), Positives = 26/61 (42%)
Query: 541 KDLIKAGGKEEIPEIKINTDVIDRLFESYASAMNTTREKINSELNLKIKNSIEIKRSAKS 600
K L K+ + K N+D + ++ +NT + LNL +K + K + K
Sbjct: 46 KILYKSNFLDRFIPSKANSDAFRIMENAFTEKLNTQESLLPDILNLNVKGVLHYKDNKKQ 105
Query: 601 K 601
K
Sbjct: 106 K 106
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 27.1 bits (57), Expect = 7.5
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 145 IKSTLLSEGITKLFPVQNQVVPFILNEHTLPKLFQ------PRDVCISAPTGSGKTL 195
+ S+L E + L NQ+ ++ P++FQ PR V P G+GKTL
Sbjct: 259 VDSSLSFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGPPGTGKTL 315
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 27.1 bits (57), Expect = 7.5
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 260 VRFTESVGWVSKVEIIVCTAGRLVEHLKTTEGFNLQHLKFLVIDEADRIMDNIQNDWLYH 319
+R E G K++I TAG+ T+ + H +V D D+ N WL
Sbjct: 47 IRTFELEGKTVKLQIWD-TAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQE 105
Query: 320 VDHHIKQG-SELMTGKVQSLNWKNVSKQKLAPQ-----KLLFSATLSQDPEKLEQ 368
+D + +G + L+ G + K V + +A + + F T ++D +EQ
Sbjct: 106 IDRYAVEGVNRLLVGNKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQ 160
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 20 EQEAKRLEQLKQRIEERRKAFSVKKSSDVITLKEEK 55
E+ A++ E+L+ R EE + KK D T ++EK
Sbjct: 659 EENARKKEELRLRFEEEDRGDPEKKDVDWYTEEKEK 694
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 100 GSSDFQKKSKVQRILPYWLSHPTVVSRDLNELSCPVEEQ 138
GS DFQ ++ ++L L HPT+ S E + EQ
Sbjct: 161 GSPDFQLNTQANKLLSILLWHPTISSHIQPETATVFIEQ 199
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 26.6 bits (56), Expect = 10.0
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 548 GKEEIPEIKINTDVIDRLFESYASAMNTTREKINSELNLKIKNSIEIKRSAKSKI 602
G +P+I IN + + + + A REK N+++N K+ +EI K I
Sbjct: 550 GVLSLPQIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLEIYSDLKQMI 604
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 3 LFIINRYNDTNDDTHIIEQEAKRLEQLKQRIEERRKAFSVK 43
L I+R +++T+ I++ RL+ L R R FS+K
Sbjct: 1050 LISISRLRQVDENTNSIKRIVSRLQPLHSRQYTRESPFSIK 1090
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 26.6 bits (56), Expect = 10.0
Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 7/106 (6%)
Query: 497 CNYVISYDPPRNIKTYIHRVGRTGRAGKIGKAVTVLLPSQISLFKDLIKAGGKEEIPEIK 556
C I Y T+ H + + K+ +LL + FK L KA +
Sbjct: 517 CRDFIKYIEEDQADTFFHEMSEKFKGCKL----ILLLEGIPNYFKSL-KAELNRQYAAA- 570
Query: 557 INTDVIDRLFESYASAMNTTREKINSEL-NLKIKNSIEIKRSAKSK 601
+N+ LF S + N T+EK+ SE+ ++SI I S K
Sbjct: 571 VNSGTRPLLFGSLSKYQNFTKEKLESEIVRFSFEHSILINTSNDEK 616
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/53 (20%), Positives = 27/53 (50%)
Query: 419 FLVEQKWDKVLCFTNAAETTHRLTVLLNTWACKGLKVAELSAALDRSMRENVL 471
+L ++ DK++CF N E V N +G ++ +S ++++ +++
Sbjct: 501 YLPQRLMDKLMCFVNYTEMARVTGVPFNFLLARGQQIKVISQLFRKALQHDLV 553
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 6 INRYNDTNDDTHIIEQEAKRLEQLKQRIEERRKAFSVKKSS 46
+++ N + ++ +E+LKQ EER K F V K +
Sbjct: 1036 VDQMNSLLREAFVLLHSNNIMERLKQEFEERYKGFLVSKKA 1076
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,668,456
Number of Sequences: 5004
Number of extensions: 111992
Number of successful extensions: 559
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 422
Number of HSP's gapped (non-prelim): 109
length of query: 607
length of database: 2,362,478
effective HSP length: 77
effective length of query: 530
effective length of database: 1,977,170
effective search space: 1047900100
effective search space used: 1047900100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
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