GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002654-TA|BGIBMGA002654-PA|IPR014021|Helicase
superfamily 1 and 2 ATP-binding, IPR001650|Helicase, C-terminal,
IPR000629|ATP-dependent helicase, DEAD-box, IPR014001|DEAD-like
helicases, N-terminal, IPR011545|DEAD/DEAH box helicase, N-terminal
         (607 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    75   5e-15
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         53   2e-08
Z69980-1|CAA93820.1|  134|Anopheles gambiae GTP-binding protein ...    29   0.36 
AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.        25   4.4  
AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic acetylch...    25   5.8  
AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein ...    25   5.8  
AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase pr...    25   7.7  

>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 74.9 bits (176), Expect = 5e-15
 Identities = 35/80 (43%), Positives = 52/80 (65%), Gaps = 1/80 (1%)

Query: 467 RENVLKKFMLSEIDVLISTDALARGIDIPDCNYVISYDPPRNIKTYIHRVGRTGRAGKIG 526
           RE  L  F    +DVLI+T   ARG+DI + N+V++YD P++I  Y+HR+GRTGR G  G
Sbjct: 462 REMALYDFKSGRMDVLIATSVAARGLDIKNVNHVVNYDLPKSIDDYVHRIGRTGRVGNKG 521

Query: 527 KAVTVLLP-SQISLFKDLIK 545
           +A +   P +  ++  DL+K
Sbjct: 522 RATSFYDPEADRAMASDLVK 541



 Score = 73.3 bits (172), Expect = 2e-14
 Identities = 55/181 (30%), Positives = 93/181 (51%), Gaps = 27/181 (14%)

Query: 137 EQEWLHPVIKSTLLSEGITKLFPVQNQVVPFILNEHTLPKLFQPRDVCISAPTGSGKTLS 196
           E+  L   + + +     TK  P+Q   +P ILN          RD+   A TGSGKT +
Sbjct: 177 ERSGLREEVMTNVRKSSYTKPTPIQRYAIPIILNG---------RDLMACAQTGSGKTAA 227

Query: 197 FVIPIV-QLLMKDVGCKIRA-----LVVLPVQELAAQVAKVFKKYCNRTHLKVALLSGSV 250
           F++P++  LL K+   ++R      ++V P +ELA Q+    +K+ + T LKV +  G  
Sbjct: 228 FMLPMIHHLLDKEDSLELRTRNPYIVIVAPTRELAIQIHDEGRKFAHGTKLKVCVSYGGT 287

Query: 251 PFQQEQQELVRFTESVGWVSKVEIIVCTAGRLVEHLKTTEGF-NLQHLKFLVIDEADRIM 309
              Q Q +L+R            ++V T GRL++ +    G+   +++ F+V+DEADR++
Sbjct: 288 AV-QHQLQLMR--------GGCHVLVATPGRLLDFI--DRGYVTFENVNFVVLDEADRML 336

Query: 310 D 310
           D
Sbjct: 337 D 337


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 53.2 bits (122), Expect = 2e-08
 Identities = 23/62 (37%), Positives = 36/62 (58%)

Query: 462 LDRSMRENVLKKFMLSEIDVLISTDALARGIDIPDCNYVISYDPPRNIKTYIHRVGRTGR 521
           ++   +E VLK+F + E ++LI T  L  GI++P CN VI ++ P N ++Y    GR   
Sbjct: 595 IEHRKQEEVLKRFRMHECNLLIGTSVLEEGIELPKCNLVIRWNSPANYRSYAQCKGRAKA 654

Query: 522 AG 523
            G
Sbjct: 655 PG 656


>Z69980-1|CAA93820.1|  134|Anopheles gambiae GTP-binding protein
           protein.
          Length = 134

 Score = 29.1 bits (62), Expect = 0.36
 Identities = 12/43 (27%), Positives = 23/43 (53%)

Query: 310 DNIQNDWLYHVDHHIKQGSELMTGKVQSLNWKNVSKQKLAPQK 352
           +N++  W+  + HH ++   L+ G    L  +N + +KLA  K
Sbjct: 34  ENVKEKWVPEITHHCQKTPFLLVGTQIDLRDENSTLEKLAKNK 76


>AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.
          Length = 615

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 12/53 (22%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 6   INRYNDTNDDTHIIEQEAKRLEQLKQRIEERRKAFSVKKSSDVITLKEEKQTE 58
           +N++   ++   +++   ++   L Q  EER +A + ++   + ++KE +QTE
Sbjct: 351 VNKHRLRDNSHQLVDALERQRAALAQ--EERNQARAAEEKDRIASIKEREQTE 401


>AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 2 protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 397 PAELKEHYVVCEAENKPLVLYNFLVEQK 424
           PAE  E Y  C AE  P + +N  + +K
Sbjct: 224 PAERHEKYYPCCAEPYPDIFFNITLRRK 251


>AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein
           protein.
          Length = 814

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 25  RLEQLKQRIEERRKAFSVKKSS 46
           +L+  K+R EERRK F +  S+
Sbjct: 694 KLQLRKERTEERRKMFKIASST 715


>AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase
           protein.
          Length = 1253

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 371 LFQPKLFSAATNECFEDEDQIRKYATPAELKEHYVVCEAENKPLVLYNFLVEQKW 425
           L  P  FS        +   ++KY T ++   HYV  + + +   L   L++QK+
Sbjct: 458 LCSPGCFSLFRGRALMENSVMKKYTTKSDQARHYVQYD-QGEDRWLCTLLLKQKF 511


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.318    0.134    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 571,332
Number of Sequences: 2123
Number of extensions: 23124
Number of successful extensions: 43
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 8
length of query: 607
length of database: 516,269
effective HSP length: 68
effective length of query: 539
effective length of database: 371,905
effective search space: 200456795
effective search space used: 200456795
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)