Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002653-TA|BGIBMGA002653-PA|undefined
(177 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 29 0.52
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 27 1.2
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 27 2.1
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 26 3.7
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 4.8
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 25 4.8
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 25 6.4
SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.4
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 25 8.5
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 25 8.5
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 28.7 bits (61), Expect = 0.52
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 110 YERLTYHATQYE--YYNADANLTRQTERILKYAIIECHSGDEKKRKITDT 157
Y+R+ A++ + Y+N D+ + E I K HS ++ K KI DT
Sbjct: 204 YDRIRMEASELKIRYHNVDSLMASTLEEIEKLQSSIVHSPEKLKGKIADT 253
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 27.5 bits (58), Expect = 1.2
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 68 DMSTAGSKRDLRGRLSDMFSRKQVSRGNRTKSRKASKRNGKHYERLTYHATQYEYYNADA 127
++S S R ++ S++ + + + K + N Y++LT T YE +AD
Sbjct: 801 NVSLHESLRSVQTENSELVTEMALLKAELVKKQAIIDANANIYDKLTADHTNYETVSADI 860
Query: 128 N 128
N
Sbjct: 861 N 861
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 26.6 bits (56), Expect = 2.1
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 46 DQADPEIVDFRPIGTV-SQGSDSDMSTAGSKRDLRGRLS-DMFSRKQVSRGNRTKSRKAS 103
++ D + FR T S+ SD + + GS+ +L + + S K++S K RKA
Sbjct: 59 EERDAHLDRFRRDSTFESETSDHEDFSGGSENELDEETTKNANSIKKISLEEVEKQRKAI 118
Query: 104 KRNGKHY 110
KR+G Y
Sbjct: 119 KRSGVIY 125
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 25.8 bits (54), Expect = 3.7
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 60 TVSQGSDSDMSTAGSKRDLRGRLSDMFSRKQVSRGNRTKSRKASKRN 106
T S G +TA R+ RL +FS+ VSR N R A+ N
Sbjct: 188 TPSNGPAPVSTTATPSRNPVTRLQRIFSQNSVSRQNSRTGRGAAVAN 234
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 25.4 bits (53), Expect = 4.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 132 QTERILKYAIIECHSGDEK 150
Q E ILK +++E H GD K
Sbjct: 1051 QMEHILKSSVVESHYGDAK 1069
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 25.4 bits (53), Expect = 4.8
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Query: 138 KYAIIECHSGDEKKRKITDTQY 159
KYAI+ SG+E RKI DT +
Sbjct: 208 KYAIVRLQSGEE--RKILDTSF 227
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 25.0 bits (52), Expect = 6.4
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 57 PIGTVSQGSDSDMSTAGSKRDLRGRLSDMFSRKQVSRGNRTKSRKASKRNGKHYERL 113
P V SD ++ S+R G+ S +V+R + + SR S R+ K E+L
Sbjct: 56 PASHVELISDERSDSSDSRR---GKEDFSISTAEVTRSSLSSSRSTSSRSDKDSEKL 109
>SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 263
Score = 25.0 bits (52), Expect = 6.4
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 74 SKRDLRGRLSDMFSR-KQVSRGNRTKSRKASKRNGK 108
SKR++ R+SD +SR K +G + S K ++ K
Sbjct: 206 SKRNVTSRVSDAYSRLKSAVKGESSLSFKRNRSKSK 241
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 24.6 bits (51), Expect = 8.5
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 63 QGSDSDMSTAGSKRDLRGRLSDMFSRKQVSRGNRTKSRKAS 103
Q S +D+S SK++ + S S+K V + ++K ++ S
Sbjct: 43 QSSKTDVSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEES 83
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 24.6 bits (51), Expect = 8.5
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 65 SDSDMSTAGSKRDLRGRLSDMFSRKQVSRGNRTKSRKASKRNGKHYERLTYHATQYEYYN 124
+ S S++ S + S S+ +RT S + + Y + T +YN
Sbjct: 144 TSSSSSSSSSSSSSSSKSSSSSSKSSSRSSSRTTSHRTTSHKSSSYRPTVFPYTTISHYN 203
Query: 125 ADANLTRQT 133
N T T
Sbjct: 204 I-TNATNGT 211
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.130 0.372
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 726,457
Number of Sequences: 5004
Number of extensions: 26504
Number of successful extensions: 88
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 82
Number of HSP's gapped (non-prelim): 10
length of query: 177
length of database: 2,362,478
effective HSP length: 68
effective length of query: 109
effective length of database: 2,022,206
effective search space: 220420454
effective search space used: 220420454
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 51 (24.6 bits)
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