Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002653-TA|BGIBMGA002653-PA|undefined
(177 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0371 + 16365528-16365728,16366471-16366812 33 0.17
09_02_0358 + 7818189-7818368,7818786-7819067 31 0.69
12_02_0019 - 12366259-12366819,12367653-12367685,12368294-123683... 29 1.6
02_04_0393 - 22581651-22582046,22582191-22582196 28 4.9
10_08_0394 + 17535525-17535656,17537205-17538371,17540558-17541448 27 6.5
07_03_1554 + 27659995-27660093,27661084-27661120,27661204-276612... 27 6.5
02_05_0246 + 27136590-27138610,27138933-27139056,27139401-271396... 27 6.5
06_01_1173 + 10014391-10014678,10015478-10017245,10017333-100174... 27 8.6
01_06_0746 - 31636024-31641396 27 8.6
>08_02_0371 + 16365528-16365728,16366471-16366812
Length = 180
Score = 32.7 bits (71), Expect = 0.17
Identities = 16/70 (22%), Positives = 33/70 (47%)
Query: 61 VSQGSDSDMSTAGSKRDLRGRLSDMFSRKQVSRGNRTKSRKASKRNGKHYERLTYHATQY 120
++ GS ++GS+ D++ ++ RK+ NR ++++ R +H + LT Q
Sbjct: 12 ITSGSSHGTRSSGSEGDIQLQVQMDLKRKRRKESNRESAKRSRLRKQQHLDDLTSQVNQL 71
Query: 121 EYYNADANLT 130
+ N T
Sbjct: 72 KMENQQLTTT 81
>09_02_0358 + 7818189-7818368,7818786-7819067
Length = 153
Score = 30.7 bits (66), Expect = 0.69
Identities = 17/68 (25%), Positives = 30/68 (44%)
Query: 62 SQGSDSDMSTAGSKRDLRGRLSDMFSRKQVSRGNRTKSRKASKRNGKHYERLTYHATQYE 121
S GS ++ S+ DL + RK+ NR +R++ R +H + LT Q +
Sbjct: 6 SSGSSQGTRSSRSEDDLNLQAQMEKKRKRRKESNRESARRSRMRKQQHLDELTSQVNQLK 65
Query: 122 YYNADANL 129
N ++
Sbjct: 66 NQNQQLSM 73
>12_02_0019 -
12366259-12366819,12367653-12367685,12368294-12368363,
12368582-12368712,12369627-12369673,12369803-12369879,
12369963-12370027,12370105-12370191,12370300-12370389,
12370972-12371037,12371608-12371664,12371749-12371850,
12373018-12373554
Length = 640
Score = 29.5 bits (63), Expect = 1.6
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 59 GTVSQGSDSDMSTAGSKRDLRGRLSDMFSRKQVSRGNRTKSRKASKRNGKHYERLTYHAT 118
GTV++G+++ + +K R D+FS + G+ R+ RN E T A
Sbjct: 497 GTVAKGNNASSAEVSNKESARNDKDDVFSDSEAEDGSSKGRREKVSRN---VEGTTNAAK 553
Query: 119 QYEYYNADANLTRQTERILKYAI 141
E + + RI K +I
Sbjct: 554 ASETSSVQKEASAAASRIEKVSI 576
>02_04_0393 - 22581651-22582046,22582191-22582196
Length = 133
Score = 27.9 bits (59), Expect = 4.9
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 68 DMSTAGSKRDLRGRLSDMFSRKQVSRGNRTKSRKASKRNGKHYERLTYHATQYEYYN 124
D+ + G LR ++ +VS ++ K +A K+ K E L Y+ Y YY+
Sbjct: 48 DVDSIGLTNALRRKVDGSAELVEVSDASKKKEEEAKKKEEK--EELVYYHHGYGYYH 102
>10_08_0394 + 17535525-17535656,17537205-17538371,17540558-17541448
Length = 729
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 64 GSDSDMSTAGSKRDLRGRLSDMFSRKQVSRGNRTKSRKAS 103
G D+S GS +L GRL+DMF ++ N R A+
Sbjct: 678 GRTIDLSVFGSYEELYGRLADMFGIEKEEIINHLHFRDAA 717
>07_03_1554 +
27659995-27660093,27661084-27661120,27661204-27661280,
27662272-27662342,27662512-27662590,27662726-27662828,
27662963-27663082,27663180-27663257,27663416-27663471,
27663588-27663657,27664179-27664266,27664503-27664800,
27664943-27665158,27665521-27665841,27666054-27666103,
27666493-27666553,27666633-27666716,27666926-27667039,
27667134-27667300,27667559-27667628,27668328-27668507,
27668619-27668807
Length = 875
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 45 DDQADPEIVDFRPIGTVSQGSDSDMSTAGSKRDLRGRLSD 84
++ D E VD + G +D+D S+R L G+LS+
Sbjct: 412 EESTDDETVDIKDSGFHDAENDADQELDDSERILSGKLSE 451
>02_05_0246 +
27136590-27138610,27138933-27139056,27139401-27139694,
27139776-27139978,27140307-27140589
Length = 974
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 53 VDFRPIGTVSQGSDSDMSTAGSKR 76
V F+P V+ SDSD T GS+R
Sbjct: 231 VSFQPKRRVASSSDSDSDTGGSRR 254
>06_01_1173 +
10014391-10014678,10015478-10017245,10017333-10017436,
10017632-10017706,10017887-10017918,10019396-10019482,
10020848-10021294,10021477-10021630,10022203-10022329,
10022547-10022632,10022719-10022790,10023083-10023286,
10023732-10024049
Length = 1253
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 68 DMSTAGSKRDLRGRLSDMFSRKQVSRGNRTKSRKASKRN 106
D+ TAG+ ++G D RK+ G+ T K SKR+
Sbjct: 620 DIGTAGANDKVKGSRPDRLERKR-KLGSETHDDKGSKRS 657
>01_06_0746 - 31636024-31641396
Length = 1790
Score = 27.1 bits (57), Expect = 8.6
Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 10/124 (8%)
Query: 44 IDDQADPEIVDFRPIGTVSQGSDSDMSTAGSKRDLRGRLSDMFSRKQVSRGNRTKSRK-A 102
+D+ ++ EI + GT S + + G LS R+++ RG T S+
Sbjct: 1017 LDNASEVEITE----GTKQLASFGSVQYENDVYPMNGGLSQR-PRRRLERGTSTVSQLFK 1071
Query: 103 SKRNGKHYERLTYHATQYEYYNADANLTRQTERIL----KYAIIECHSGDEKKRKITDTQ 158
+ +G + TY Y N ++ E IL K + DE +I DTQ
Sbjct: 1072 GQEDGAAIMKYTYVVACQIYGNQKKAKDQRAEDILTLMKKNDALRVAYVDEVHPEIGDTQ 1131
Query: 159 YYCV 162
YY V
Sbjct: 1132 YYSV 1135
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.130 0.372
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,612,955
Number of Sequences: 37544
Number of extensions: 159547
Number of successful extensions: 353
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 9
length of query: 177
length of database: 14,793,348
effective HSP length: 77
effective length of query: 100
effective length of database: 11,902,460
effective search space: 1190246000
effective search space used: 1190246000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 57 (27.1 bits)
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