GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002653-TA|BGIBMGA002653-PA|undefined
         (177 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28991-10|AAK68306.2|  487|Caenorhabditis elegans Hypothetical p...    28   3.3  
U28991-9|AAU05576.1|  484|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z73910-4|CAA98136.1|  662|Caenorhabditis elegans Hypothetical pr...    28   4.3  
U00045-5|AAM29685.1|  132|Caenorhabditis elegans Hypothetical pr...    27   7.5  

>U28991-10|AAK68306.2|  487|Caenorhabditis elegans Hypothetical
           protein F08F8.10a protein.
          Length = 487

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 9/34 (26%), Positives = 19/34 (55%)

Query: 93  RGNRTKSRKASKRNGKHYERLTYHATQYEYYNAD 126
           + N+  +   S+R G+H+    +   ++EYY+ D
Sbjct: 403 KANKNPNSFGSRRRGRHHSGQNFDVDEHEYYDDD 436


>U28991-9|AAU05576.1|  484|Caenorhabditis elegans Hypothetical
           protein F08F8.10b protein.
          Length = 484

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 9/34 (26%), Positives = 19/34 (55%)

Query: 93  RGNRTKSRKASKRNGKHYERLTYHATQYEYYNAD 126
           + N+  +   S+R G+H+    +   ++EYY+ D
Sbjct: 400 KANKNPNSFGSRRRGRHHSGQNFDVDEHEYYDDD 433


>Z73910-4|CAA98136.1|  662|Caenorhabditis elegans Hypothetical
           protein M117.4 protein.
          Length = 662

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 96  RTKSRKASKRNGKHYERLTYHATQYEYYNADANLTR-QTERILKYAIIECHSGDEKKRK 153
           + +SR+ SKR  K   +     T   + +A    TR +TER LK    E  S DE+ RK
Sbjct: 261 KVQSRRKSKRQKKSIFQQPVQRTPGSHPSAYLQPTRARTERSLKLPPAEPKSVDERPRK 319


>U00045-5|AAM29685.1|  132|Caenorhabditis elegans Hypothetical
           protein F28F5.6 protein.
          Length = 132

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 73  GSKRDLRGRLSDM-FSRKQVSRGNRTKSRKASKRNGKHY 110
           GS+  +R R   +   RK VSRG   K    S R   HY
Sbjct: 57  GSQVVIRNRSQSVTVERKHVSRGTSDKQNSPSSRRQSHY 95


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.314    0.130    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,949,761
Number of Sequences: 27539
Number of extensions: 145880
Number of successful extensions: 394
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 392
Number of HSP's gapped (non-prelim): 4
length of query: 177
length of database: 12,573,161
effective HSP length: 77
effective length of query: 100
effective length of database: 10,452,658
effective search space: 1045265800
effective search space used: 1045265800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 56 (26.6 bits)