GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002653-TA|BGIBMGA002653-PA|undefined
         (177 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               26   0.24 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   6.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   9.0  

>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 25.8 bits (54), Expect = 0.24
 Identities = 15/58 (25%), Positives = 27/58 (46%)

Query: 77  DLRGRLSDMFSRKQVSRGNRTKSRKASKRNGKHYERLTYHATQYEYYNADANLTRQTE 134
           DL+  +  +  +   +  N  K   A K +    + + +H TQY   NA++N T + E
Sbjct: 89  DLKDSIRKIIRQCVDNAKNEDKCLTAQKFSRCVIDYVKFHITQYMISNANSNTTSEEE 146


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 8/26 (30%), Positives = 16/26 (61%)

Query: 78  LRGRLSDMFSRKQVSRGNRTKSRKAS 103
           ++G   DM+ R+QV   N  ++ +A+
Sbjct: 691 VKGSAVDMYFRRQVELSNMYRTMEAN 716


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 116 HATQYEYYNADANLTRQTERILKY 139
           HA     YN +  ++  TERI  Y
Sbjct: 359 HAAMLYQYNFNIIISEPTERISPY 382


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.130    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,203
Number of Sequences: 429
Number of extensions: 1609
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 177
length of database: 140,377
effective HSP length: 54
effective length of query: 123
effective length of database: 117,211
effective search space: 14416953
effective search space used: 14416953
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 41 (20.6 bits)