GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002651-TA|BGIBMGA002651-PA|IPR013132|N-acetylneuraminic
acid synthase, N-terminal
         (349 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           24   1.4  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    23   2.5  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    23   2.5  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    22   7.6  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    22   7.6  

>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 180 LLHCISAYPVPFEDCNLTVLQDYKNTFD 207
           + H +   P+ +E C  ++ Q Y N FD
Sbjct: 45  MYHSVKEEPI-YESCRFSINQPYLNHFD 71


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 180 LLHCISAYPVPFEDCNLTVLQDYKNTFD 207
           + H +   P+ +E C  ++ Q Y N FD
Sbjct: 45  MYHRVKEEPI-YESCRFSINQPYLNHFD 71


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 180 LLHCISAYPVPFEDCNLTVLQDYKNTFD 207
           + H +   P+ +E C  ++ Q Y N FD
Sbjct: 45  MYHRVKEEPI-YESCRFSINQPYLNHFD 71


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 108 FTASAMDMVSFDFLVNLKVPFIKIG 132
           F A    + SFD L ++ V FIK G
Sbjct: 110 FLARGTLIKSFDMLSHVDVSFIKAG 134


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 108 FTASAMDMVSFDFLVNLKVPFIKIG 132
           F A    + SFD L ++ V FIK G
Sbjct: 110 FLARGTLIKSFDMLSHVDVSFIKAG 134


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.137    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,311
Number of Sequences: 317
Number of extensions: 2957
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 5
length of query: 349
length of database: 114,650
effective HSP length: 57
effective length of query: 292
effective length of database: 96,581
effective search space: 28201652
effective search space used: 28201652
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)