GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002651-TA|BGIBMGA002651-PA|IPR013132|N-acetylneuraminic
acid synthase, N-terminal
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    30   0.43 
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    28   2.3  
SPAC1782.03 |||microfibrillar-associated protein family protein|...    27   5.2  
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar...    26   6.9  
SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc...    26   9.2  

>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 30.3 bits (65), Expect = 0.43
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 271 LGTPIKKVVTSEIPCIDKLQKSLVMGSTKNKGEILYPGDVKIKVAEPKGLNALHLEDVIY 330
           L  PI+K ++      D  Q   V     N  EI     ++ ++ EP GL     E V+Y
Sbjct: 130 LRLPIRKQISK-----DSSQSQNVDSGKTNHEEIHESRHLQTEIEEPSGLEESSEESVLY 184

Query: 331 KTLVYDKKEDE 341
               Y+K ++E
Sbjct: 185 SEEFYEKSDEE 195


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 12/68 (17%)

Query: 155 STGMVDKTAVKTIYDIISSDHKQFCLLHCISAYPVP---------FEDC--NLTVLQDYK 203
           S  +     ++ +  +I + H   CLLH +S  P P          EDC  NL + + + 
Sbjct: 178 SHNLTPSNVIRELPIVIHNSHLATCLLHSLSEPPTPASTLTAEAALEDCESNLPLTETFS 237

Query: 204 NTFDVPVG 211
           N F+V +G
Sbjct: 238 N-FEVSLG 244


>SPAC1782.03 |||microfibrillar-associated protein family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 16/54 (29%), Positives = 26/54 (48%)

Query: 252 LTPSEFQQLVRDVRVIEASLGTPIKKVVTSEIPCIDKLQKSLVMGSTKNKGEIL 305
           L P +F   V   R       T + K VTS+    + +++ L++  TKN  E+L
Sbjct: 126 LLPPKFTSKVIKNRAKANEEDTEVLKKVTSQKILEETIKRELLLKETKNNNELL 179


>SPAC27F1.04c |nuf2||spindle pole body protein
           Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 234 EKHITLDKSMKGTDHVCSLTPSEFQQLVRDVRVIEASLGTPIKKVVTSEIPCIDKLQKSL 293
           E++  + +S+     +CS   +E+ ++  +   ++      +  ++ S +  I+KLQ S+
Sbjct: 181 ERNEEMFQSLIEDKRLCSQVRTEYDRIRMEASELKIRYHN-VDSLMASTLEEIEKLQSSI 239

Query: 294 VMGSTKNKGEI 304
           V    K KG+I
Sbjct: 240 VHSPEKLKGKI 250


>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 260 LVRDVRVIEASL--GTPIKKVVTSEIPCID 287
           LV    +++ +L  GTP+++VV   I CID
Sbjct: 34  LVWGPEIVDKALLSGTPVERVVNDRINCID 63


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.137    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,526,815
Number of Sequences: 5004
Number of extensions: 60241
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 138
Number of HSP's gapped (non-prelim): 5
length of query: 349
length of database: 2,362,478
effective HSP length: 73
effective length of query: 276
effective length of database: 1,997,186
effective search space: 551223336
effective search space used: 551223336
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)