GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002651-TA|BGIBMGA002651-PA|IPR013132|N-acetylneuraminic
acid synthase, N-terminal
         (349 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0026 + 219663-220843,222201-222447,222574-224535                 32   0.59 
11_01_0026 + 193383-194566,195726-195972,196099-198063                 31   1.4  
04_01_0178 + 2006369-2006494,2006582-2006664,2007693-2007819,200...    30   3.2  
09_02_0383 - 8259156-8261843                                           29   7.3  
06_03_1284 - 28988287-28988922,28989335-28989765,28989850-289899...    29   7.3  

>12_01_0026 + 219663-220843,222201-222447,222574-224535
          Length = 1129

 Score = 32.3 bits (70), Expect = 0.59
 Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 1/76 (1%)

Query: 272 GTPIKKVVTSEIPCIDKLQKSLVMGSTKNKGEILYPGDVKIKVAEPKGLNALHLEDVIYK 331
           G P  KVV S    + K+Q SL  GS  +K ++    D +     P  L  LH    I  
Sbjct: 917 GCPSGKVVVSPRHFLTKIQASLCSGSI-SKRKLSMSDDQEKLQESPSSLKRLHRTSSIPF 975

Query: 332 TLVYDKKEDEPLNEGD 347
            L     EDEP +  D
Sbjct: 976 DLNLPVDEDEPFDADD 991


>11_01_0026 + 193383-194566,195726-195972,196099-198063
          Length = 1131

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 1/76 (1%)

Query: 272 GTPIKKVVTSEIPCIDKLQKSLVMGSTKNKGEILYPGDVKIKVAEPKGLNALHLEDVIYK 331
           G P  KVV S    + K+Q SL  GS  +K ++    D +     P     LH    +  
Sbjct: 918 GCPSGKVVVSPRHFLTKIQASLCSGSI-SKRKLSISDDQEKLQESPSSSKRLHRTSSVPF 976

Query: 332 TLVYDKKEDEPLNEGD 347
            L     EDEPL+  D
Sbjct: 977 DLNLPVDEDEPLDADD 992


>04_01_0178 +
           2006369-2006494,2006582-2006664,2007693-2007819,
           2008579-2008638,2009606-2009735,2009821-2010047,
           2010226-2010318,2010395-2010466,2011392-2011532,
           2012045-2012047,2012387-2012443,2012909-2012995,
           2013081-2013116
          Length = 413

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 70  YDNPNSWGKTYGEHKSHLEFSDT---QYRELFRYAQEVGILFTASAMDMV 116
           Y +PNS+G+     K H+++S T    +R    +A  VG   T    +++
Sbjct: 65  YCSPNSYGQNNLHEKPHIDYSSTICDPFRHANEFAPTVGFFLTTHPSEVI 114


>09_02_0383 - 8259156-8261843
          Length = 895

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 5/69 (7%)

Query: 147 SKKIPLIISTGMVDKTAV----KTIYDIISSDHKQFCLLHCISAYPVPFEDCNLTVLQDY 202
           +K   L   +G+  + A+    +  YD +SSDH + C L C + +P  +   N+ ++  +
Sbjct: 381 NKSYQLFEKSGLKKENAILATLRLTYDNLSSDHLRECFLAC-AIWPQDYSIWNIDLVNCW 439

Query: 203 KNTFDVPVG 211
                +P+G
Sbjct: 440 IGLGLIPIG 448


>06_03_1284 -
           28988287-28988922,28989335-28989765,28989850-28989956,
           28990066-28990136
          Length = 414

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 239 LDKSMKGTDHVCSLTPSEFQQLVRDVRVIEASLGTPIKKVVTSEIPC--IDKLQKSLVM 295
           L   M+G DH  S T  +  Q  RD+ + E   G+  + ++T+++    ID  Q SLV+
Sbjct: 296 LTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSS-RVLITTDLLARGIDVQQVSLVI 353


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.137    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,242,108
Number of Sequences: 37544
Number of extensions: 343494
Number of successful extensions: 609
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 609
Number of HSP's gapped (non-prelim): 5
length of query: 349
length of database: 14,793,348
effective HSP length: 83
effective length of query: 266
effective length of database: 11,677,196
effective search space: 3106134136
effective search space used: 3106134136
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)