Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002650-TA|BGIBMGA002650-PA|IPR000891|Pyruvate
carboxyltransferase
(147 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1165 - 9267891-9268145,9268395-9268510,9268991-9269127,926... 171 3e-43
11_01_0220 + 1717861-1717979,1718149-1718281,1718544-1718723,171... 170 4e-43
12_01_0221 + 1671231-1671349,1671613-1671745,1672011-1672190,167... 169 6e-43
02_04_0499 - 23485707-23485822,23485899-23486112,23486464-234865... 32 0.16
01_05_0634 + 23843152-23843272,23843441-23843628,23843876-238442... 29 1.5
11_02_0028 + 7517196-7517206,7517256-7517312,7517423-7517503,751... 29 2.0
05_05_0366 + 24442227-24442472,24442549-24442734,24442818-244429... 28 2.6
02_02_0451 + 10387353-10387580,10387675-10387934,10388160-103884... 27 4.6
12_01_0255 + 1888193-1888914,1890247-1890460,1890535-1890615,189... 27 6.1
11_01_0257 + 1972111-1972832,1974214-1974427,1974502-1974582,197... 27 6.1
01_06_0073 + 26191822-26192116,26192227-26192445,26193655-261938... 27 6.1
10_08_1010 + 22230329-22230658,22231033-22231298,22231411-222315... 27 8.1
06_01_0548 + 3904487-3904711,3904805-3905064,3905284-3905608,390... 27 8.1
06_01_0545 + 3892664-3892888,3892914-3893173,3893393-3893717,389... 27 8.1
06_01_0535 + 3854608-3854832,3854926-3855185,3855405-3855729,385... 27 8.1
05_04_0176 + 18749945-18749969,18750186-18750751,18750876-187509... 27 8.1
>01_01_1165 - 9267891-9268145,9268395-9268510,9268991-9269127,
9269645-9269808,9269892-9269972,9270783-9270962,
9271489-9271929,9273234-9273344,9274355-9274463,
9274618-9274643,9274823-9274903,9275013-9275211,
9275374-9275449,9275553-9275769,9276117-9276155,
9276684-9276783,9276962-9277084,9277171-9277895
Length = 1059
Score = 171 bits (415), Expect = 3e-43
Identities = 76/123 (61%), Positives = 98/123 (79%)
Query: 1 MGCYEVSLGDTIGVGTAGSVRRLLHEILTVAKPEQLALHFHDTYGQGLSNLLAGLEFGIK 60
MGCYEVSLGDTIGVGT G+V +L ++ E+LA+HFHDTYGQ LSN+L L+ G+
Sbjct: 920 MGCYEVSLGDTIGVGTPGTVVPMLEAVMFFVPKEKLAVHFHDTYGQSLSNILISLQMGVS 979
Query: 61 TVDSSISGLGGCPYARGASGNLATEDLVYFLYGLGVNTDVDLVKIIEAGRYISNFLGKPT 120
VDSS++GLGGCPYA+GASGN+ATED+VY L GLG++T+VDL K++ AG +I N LG+ +
Sbjct: 980 VVDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLGISTNVDLGKVMAAGEFICNHLGRQS 1039
Query: 121 ESK 123
SK
Sbjct: 1040 GSK 1042
>11_01_0220 +
1717861-1717979,1718149-1718281,1718544-1718723,
1719046-1719126,1719259-1719422,1719518-1719654,
1719900-1720015,1720134-1720367
Length = 387
Score = 170 bits (413), Expect = 4e-43
Identities = 74/128 (57%), Positives = 100/128 (78%)
Query: 1 MGCYEVSLGDTIGVGTAGSVRRLLHEILTVAKPEQLALHFHDTYGQGLSNLLAGLEFGIK 60
MGC E+SLGDTIGVGT GS+ +L +++ ++LA+HFHDTYGQ L+N+L L+ GI
Sbjct: 255 MGCSEISLGDTIGVGTPGSILAMLEAVMSFVPVDKLAVHFHDTYGQALANILVSLQLGIN 314
Query: 61 TVDSSISGLGGCPYARGASGNLATEDLVYFLYGLGVNTDVDLVKIIEAGRYISNFLGKPT 120
VDSS+SGLGGCPYA+GA+GN+ATED+VY L+GLG+ T+VDL K+++AG YIS LG+ +
Sbjct: 315 IVDSSVSGLGGCPYAKGATGNVATEDVVYMLHGLGIETNVDLNKLMDAGDYISKHLGRQS 374
Query: 121 ESKVNRVI 128
SK +
Sbjct: 375 GSKTTTAL 382
>12_01_0221 +
1671231-1671349,1671613-1671745,1672011-1672190,
1672632-1672712,1672850-1673013,1673109-1673245,
1673492-1673607,1673725-1673958
Length = 387
Score = 169 bits (412), Expect = 6e-43
Identities = 74/128 (57%), Positives = 100/128 (78%)
Query: 1 MGCYEVSLGDTIGVGTAGSVRRLLHEILTVAKPEQLALHFHDTYGQGLSNLLAGLEFGIK 60
MGC E+SLGDTIGVGT GSV +L +++ +++A+HFHDTYGQ L+N+L L+ GI
Sbjct: 255 MGCSEISLGDTIGVGTPGSVLAMLEAVMSFVPVDKIAVHFHDTYGQALANILVSLQLGIN 314
Query: 61 TVDSSISGLGGCPYARGASGNLATEDLVYFLYGLGVNTDVDLVKIIEAGRYISNFLGKPT 120
VDSS+SGLGGCPYA+GA+GN+ATED+VY L+GLG+ T+VDL K+++AG YIS LG+ +
Sbjct: 315 IVDSSVSGLGGCPYAKGATGNVATEDVVYMLHGLGIETNVDLNKLMDAGDYISKHLGRQS 374
Query: 121 ESKVNRVI 128
SK +
Sbjct: 375 GSKTTTAL 382
>02_04_0499 -
23485707-23485822,23485899-23486112,23486464-23486511,
23486609-23486695,23486808-23486945,23487159-23487389,
23488524-23489504
Length = 604
Score = 32.3 bits (70), Expect = 0.16
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 63 DSSISGLGGCPYARGASGNLATEDLVYFLYGLGVNTDVDLVKIIEAGRYISNFLGK 118
+ +G G A GA G E +VYF Y L + T KI+ A + NFLGK
Sbjct: 380 EEQAAGGGEAGEAGGAGGGGEGEGVVYFWYPLNIVTGGTTAKIMLAAK--DNFLGK 433
>01_05_0634 +
23843152-23843272,23843441-23843628,23843876-23844205,
23844319-23844565,23844591-23844668,23844740-23845024,
23845139-23845225,23845365-23845415,23845625-23845761,
23845853-23846437
Length = 702
Score = 29.1 bits (62), Expect = 1.5
Identities = 17/62 (27%), Positives = 28/62 (45%)
Query: 5 EVSLGDTIGVGTAGSVRRLLHEILTVAKPEQLALHFHDTYGQGLSNLLAGLEFGIKTVDS 64
E TIG T+ SV + +LT+ P +H+ Y LS+ L+ + +D
Sbjct: 376 EAKSNQTIGDSTSLSVMKSSSTLLTLLTPANGTIHWTGNYPGELSDFLSSTDLNDFALDE 435
Query: 65 SI 66
+I
Sbjct: 436 TI 437
>11_02_0028 +
7517196-7517206,7517256-7517312,7517423-7517503,
7518009-7518108,7518454-7518507,7519045-7519115,
7519248-7519455,7519647-7519700,7519934-7520025,
7520090-7520285,7521158-7521339,7521429-7521496,
7522848-7522920,7523010-7523071,7523155-7524079,
7524843-7525133,7525601-7525871
Length = 931
Score = 28.7 bits (61), Expect = 2.0
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 23 LLHEILTVAKPEQLALHFHDTYGQGLSNLLAGLEFGIKTVDSSISGLGGCPY--ARGASG 80
LLH L+ P+Q+++ +D Y +N + F I + + CPY G+S
Sbjct: 239 LLHHRLS---PKQISICLNDMYESRTANGQPPVTFAIAAQEKEDIHISECPYFIISGSSD 295
Query: 81 NLATEDLVYFLYGLGVNTDVDLVK 104
+ +D+ ++ G ++DL K
Sbjct: 296 AFSAKDMWNYVKENGSFDNLDLTK 319
>05_05_0366 +
24442227-24442472,24442549-24442734,24442818-24442983,
24443109-24443560
Length = 349
Score = 28.3 bits (60), Expect = 2.6
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 18 GSVRRLLHEILTVAKPEQLALHFHDTYGQG 47
G +R +L E T+A P L +H+HD + QG
Sbjct: 55 GEMRMILEEDPTLA-PSLLRMHYHDCFVQG 83
>02_02_0451 +
10387353-10387580,10387675-10387934,10388160-10388484,
10388819-10389061
Length = 351
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 6 VSLGDTIGVGTAGSVRRLLHEILTVAKPEQLAL 38
++LGDT+ V G R +H ++T A+ E+++L
Sbjct: 264 INLGDTMEVMCNGIFRSPVHRVVTNAEKERISL 296
>12_01_0255 +
1888193-1888914,1890247-1890460,1890535-1890615,
1890753-1890842,1890950-1891036,1891553-1891653,
1891966-1892011,1892366-1892440,1892557-1892640,
1892721-1892936,1893216-1893358,1893488-1893629
Length = 666
Score = 27.1 bits (57), Expect = 6.1
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 2 GCYEVSLGDTIGVGTAGSVRRLLHEILTVAKPEQLAL---HFHDTYGQGLSNLLAGLEFG 58
G +++ DT+G +L+ +I + A+ H + G +N LAG G
Sbjct: 258 GATTLNIPDTVGYTLPYEFGKLIADIKANTPGIENAIISTHCQNDLGLATANTLAGAHAG 317
Query: 59 IKTVDSSISGLG 70
+ ++ +I+G+G
Sbjct: 318 ARQLEVTINGIG 329
>11_01_0257 +
1972111-1972832,1974214-1974427,1974502-1974582,
1974720-1974809,1974911-1974997,1975484-1975584,
1975892-1975937,1976272-1976346,1976459-1976542,
1976620-1976861,1977067-1977258,1977391-1977532
Length = 691
Score = 27.1 bits (57), Expect = 6.1
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 2 GCYEVSLGDTIGVGTAGSVRRLLHEILTVAKPEQLAL---HFHDTYGQGLSNLLAGLEFG 58
G +++ DT+G +L+ +I + A+ H + G +N LAG G
Sbjct: 258 GATTLNIPDTVGYTLPYEFGKLIADIKANTPGIENAIISTHCQNDLGLATANTLAGAHAG 317
Query: 59 IKTVDSSISGLG 70
+ ++ +I+G+G
Sbjct: 318 ARQLEVTINGIG 329
>01_06_0073 +
26191822-26192116,26192227-26192445,26193655-26193803,
26193910-26194186,26194683-26194963
Length = 406
Score = 27.1 bits (57), Expect = 6.1
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 36 LALHFHDTYGQGLSNLLAGLEFGIKTVDSSISGLGGCPYARGASG 80
+A+ + D YG + L+ +FGIK ++ G GG PY G SG
Sbjct: 292 VAIIYADYYGAAMEVFLSPEQFGIKDPLTACCG-GGGPY--GVSG 333
>10_08_1010 +
22230329-22230658,22231033-22231298,22231411-22231528,
22231842-22232050,22232297-22232750
Length = 458
Score = 26.6 bits (56), Expect = 8.1
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 66 ISGLGGCPYARGASGNLATEDLVYFLYGLGVNTDVDLVKIIEAGRYISNFLGKPTESKVN 125
+ + GC Y A G+L+ + G +T+ ++I AG S+ LG +K+
Sbjct: 144 LRAMDGCSYKAAAGGSLSNSLVALSRLGSSRSTNYPELRIAMAGSVGSDPLGSFYRAKLR 203
Query: 126 R 126
R
Sbjct: 204 R 204
>06_01_0548 +
3904487-3904711,3904805-3905064,3905284-3905608,
3905729-3905971
Length = 350
Score = 26.6 bits (56), Expect = 8.1
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 6 VSLGDTIGVGTAGSVRRLLHEILTVAKPEQLAL 38
++LGDT+ V G R +H ++T A+ E+++L
Sbjct: 263 INLGDTMEVLCNGIFRSPVHRVVTNAERERISL 295
>06_01_0545 +
3892664-3892888,3892914-3893173,3893393-3893717,
3893838-3893999,3894192-3894272
Length = 350
Score = 26.6 bits (56), Expect = 8.1
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 6 VSLGDTIGVGTAGSVRRLLHEILTVAKPEQLAL 38
++LGDT+ V G R +H ++T A+ E+++L
Sbjct: 263 INLGDTMEVLCNGIFRSPVHRVVTNAERERISL 295
>06_01_0535 +
3854608-3854832,3854926-3855185,3855405-3855729,
3855850-3856092
Length = 350
Score = 26.6 bits (56), Expect = 8.1
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 6 VSLGDTIGVGTAGSVRRLLHEILTVAKPEQLAL 38
++LGDT+ V G R +H ++T A+ E+++L
Sbjct: 263 INLGDTMEVLCNGIFRSPVHRVVTNAERERISL 295
>05_04_0176 +
18749945-18749969,18750186-18750751,18750876-18750944,
18752128-18752325,18752791-18752922,18753658-18753744,
18753845-18754288,18754644-18754811,18755129-18755359,
18755893-18756008,18756125-18756407
Length = 772
Score = 26.6 bits (56), Expect = 8.1
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 19 SVRRLLHEILTVAKPEQLALHFHDTYGQGLSNLLAGLEFGIKTVDSSISGL 69
S +L+H + TV+KP Q A + QG+ L+ +E ++T+ I L
Sbjct: 719 SANQLVHFVETVSKPYQDACQQKIDWLQGVQGELSTVERKLQTLKVEIQNL 769
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.139 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,166,931
Number of Sequences: 37544
Number of extensions: 164838
Number of successful extensions: 366
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 353
Number of HSP's gapped (non-prelim): 18
length of query: 147
length of database: 14,793,348
effective HSP length: 76
effective length of query: 71
effective length of database: 11,940,004
effective search space: 847740284
effective search space used: 847740284
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
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