GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002650-TA|BGIBMGA002650-PA|IPR000891|Pyruvate
carboxyltransferase
         (147 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025726-20|AAK73908.1|  318|Caenorhabditis elegans Hypothetical...   153   5e-38
Z81052-1|CAB02872.1| 1175|Caenorhabditis elegans Hypothetical pr...    31   0.44 
AF237467-1|AAF60326.1| 1175|Caenorhabditis elegans pyruvate carb...    31   0.44 
AL132898-4|CAC14407.3|  968|Caenorhabditis elegans Hypothetical ...    29   1.8  
Z32680-3|CAA83598.1|  317|Caenorhabditis elegans Hypothetical pr...    27   5.4  
Z68337-8|CAA92749.2|  241|Caenorhabditis elegans Hypothetical pr...    26   9.5  
AF039716-1|AAY55879.1|   82|Caenorhabditis elegans Hypothetical ...    26   9.5  

>AC025726-20|AAK73908.1|  318|Caenorhabditis elegans Hypothetical
           protein Y71G12B.10 protein.
          Length = 318

 Score =  153 bits (371), Expect = 5e-38
 Identities = 70/123 (56%), Positives = 92/123 (74%)

Query: 2   GCYEVSLGDTIGVGTAGSVRRLLHEILTVAKPEQLALHFHDTYGQGLSNLLAGLEFGIKT 61
           GCYEVSLGDTIGVGT  +V ++L  +L     E+LA+HFHDTYGQ L+N+L  +E GI++
Sbjct: 183 GCYEVSLGDTIGVGTVKTVSKMLDTVLKSVPAEKLAVHFHDTYGQALANVLISIEKGIRS 242

Query: 62  VDSSISGLGGCPYARGASGNLATEDLVYFLYGLGVNTDVDLVKIIEAGRYISNFLGKPTE 121
            DSSI+GLGGCPYA+GA+GNLATEDL+YFL G G  T V+L K++E  ++ +   G    
Sbjct: 243 ADSSIAGLGGCPYAKGATGNLATEDLLYFLKGNGFETGVNLDKVVETAKWFNEAAGYDKW 302

Query: 122 SKV 124
           S+V
Sbjct: 303 SRV 305


>Z81052-1|CAB02872.1| 1175|Caenorhabditis elegans Hypothetical
           protein D2023.2 protein.
          Length = 1175

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 16/66 (24%), Positives = 32/66 (48%)

Query: 6   VSLGDTIGVGTAGSVRRLLHEILTVAKPEQLALHFHDTYGQGLSNLLAGLEFGIKTVDSS 65
           +S+ D  GV    + + L+  +        + +H HDT G G++ +L   + G   VD++
Sbjct: 734 LSIKDMAGVLKPEAAKLLIGALRDKFPDIPIHVHTHDTSGAGVAAMLECAKAGADVVDAA 793

Query: 66  ISGLGG 71
           +  + G
Sbjct: 794 VDSMSG 799


>AF237467-1|AAF60326.1| 1175|Caenorhabditis elegans pyruvate
           carboxylase protein.
          Length = 1175

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 16/66 (24%), Positives = 32/66 (48%)

Query: 6   VSLGDTIGVGTAGSVRRLLHEILTVAKPEQLALHFHDTYGQGLSNLLAGLEFGIKTVDSS 65
           +S+ D  GV    + + L+  +        + +H HDT G G++ +L   + G   VD++
Sbjct: 734 LSIKDMAGVLKPEAAKLLIGALRDKFPDIPIHVHTHDTSGAGVAAMLECAKAGADVVDAA 793

Query: 66  ISGLGG 71
           +  + G
Sbjct: 794 VDSMSG 799


>AL132898-4|CAC14407.3|  968|Caenorhabditis elegans Hypothetical
           protein Y59A8B.6 protein.
          Length = 968

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 65  SISGLGGCPYARGASGNLATEDLVYFLYGLGVNTDVDLVKIIEAGRYISNF-LGKPTESK 123
           S  G GG   A GA   + T      +   G +TD+DLVKI +A   I +  L + ++S 
Sbjct: 229 STLGGGGGAAAAGAKSGIMTPGWKSDIPSSGTSTDLDLVKIGQARNKIMDMQLTQVSDSV 288

Query: 124 VNRVISD 130
             + + D
Sbjct: 289 TGQTVVD 295


>Z32680-3|CAA83598.1|  317|Caenorhabditis elegans Hypothetical
           protein C28A5.3 protein.
          Length = 317

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 4   YEVSLGDTIGVGTAGSVRRLLHEILTVAKPEQLALHFHDTYGQG 47
           Y  SL D I   T+G  RRLL  IL   + E     F DT+  G
Sbjct: 128 YSKSLEDAISADTSGDFRRLLIVILQAKREEG---GFADTFKVG 168


>Z68337-8|CAA92749.2|  241|Caenorhabditis elegans Hypothetical
           protein M7.12 protein.
          Length = 241

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 9   GDTIGVGTAGSVRRLLHEILTVAKPEQ-LALHF 40
           GD  GV T G +   LHE     +P+Q   LHF
Sbjct: 118 GDRKGVMTIGEILNELHESFWKLRPDQHTVLHF 150


>AF039716-1|AAY55879.1|   82|Caenorhabditis elegans Hypothetical
           protein W03G9.8 protein.
          Length = 82

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 104 KIIEAGRYISNFLGKPTESKVNRVISDRFTNY 135
           +I+E G++++ FL     S V RV   RF+ Y
Sbjct: 10  RIVEMGKFLNVFLTAEQVSSVERVRFYRFSQY 41


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.139    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,395,756
Number of Sequences: 27539
Number of extensions: 126857
Number of successful extensions: 258
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 252
Number of HSP's gapped (non-prelim): 7
length of query: 147
length of database: 12,573,161
effective HSP length: 75
effective length of query: 72
effective length of database: 10,507,736
effective search space: 756556992
effective search space used: 756556992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)