Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002649-TA|BGIBMGA002649-PA|IPR011030|Lipovitellin,
superhelical, IPR000357|HEAT, IPR013932|TATA-binding protein
interacting (TIP20)
(1273 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 82 4e-16
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 42 6e-04
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 39 0.005
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb... 31 0.78
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom... 31 1.0
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 31 1.4
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su... 30 2.4
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 30 2.4
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 29 4.2
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 29 4.2
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 29 5.5
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 29 5.5
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 28 7.3
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 28 7.3
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 28 9.6
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 28 9.6
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 82.2 bits (194), Expect = 4e-16
Identities = 48/191 (25%), Positives = 101/191 (52%), Gaps = 3/191 (1%)
Query: 1056 RDAELGVRRVALVAFNSAAHNKPSLVRDLLPQVLPTIYAETKVKKELIREVEMGPFKHSV 1115
++ +L V + L S N+ S + D+ ++L + +++ V + V+MGPF+H V
Sbjct: 1015 QNPDLEVSQETLQVIISVIKNRRSCIADVYNELLQGLISKSSVDSSNVHVVQMGPFQHVV 1074
Query: 1116 DDGLDLRKAAFECMYTLLGTCLDRLDVFEFLRHVEDGLRDHYDIKMLTYLMCARLAQLCP 1175
D+ ++ R+ FE +Y+LL + FL+ GL D + IK+++ + +L P
Sbjct: 1075 DNSINQRQLVFETLYSLLDIPESLNHLTHFLQVSVMGLEDEHYIKLVSLSILEKLVDCSP 1134
Query: 1176 AVVLQRLESLVEPLRATCTMKVKANSVKQEYEKQDELKRSALRATAALMQIPEADKNPHL 1235
+++ +++++++E LR ++ ++K + + +L RSALR L + NP +
Sbjct: 1135 SIIDEQVDTILEALRKIIELRKTEKTLKTDSDNILDLVRSALR---VLFTMKLKCDNPVI 1191
Query: 1236 MDFVTQIRSLP 1246
+F +Q++ P
Sbjct: 1192 SEFESQVQKGP 1202
Score = 58.4 bits (135), Expect = 6e-09
Identities = 81/398 (20%), Positives = 161/398 (40%), Gaps = 25/398 (6%)
Query: 11 LLEK-MTSNDKDFRFMATNDLMTELQK-DSIK-LDDDSEREVVKMLLRLLEDKNGEVQNL 67
LL+K + S+DKD R+MA +DL L + +K L +S + + +LL+ L D + EVQ
Sbjct: 6 LLKKYVESSDKDIRYMALSDLAARLNDANHLKNLKLESFPDTLDVLLQALSDASPEVQQE 65
Query: 68 AVKCLGPLVNKVKEYQVEGIVDTLCANMLSDTEQLRDISSIGLKTVISEL-PLGSNTLAA 126
AV+C+ + +K+ + +++ V+ L + ++ + +S++ L S + P + +
Sbjct: 66 AVRCVAIISSKIPQDKLKSTVENLLSG-VAGKKSKNYLSALSLLLSNSNVQPFVNKFYTS 124
Query: 127 NVCKKITGKLSS-AIEKQEDVSVQLEALDILADLLSRFGGLLISFHPMLLNSLLP-QLAS 184
V L + ++E ++ D L S LL + + ++
Sbjct: 125 TVFPSFLQILKQYNVAQEEFFAILCVVCDSLEIYHSNLSTLLPNNFELCIDVFQKCTTQC 184
Query: 185 PRQAVRKRTIVALSHLVMSCNASLYNKLIDHLLEGLXXXXXXXXXRTHIQCIASICRQAG 244
R+ + K+ LS + + Y +I+ L GL I+ + I +
Sbjct: 185 QRELIIKKACYLLSDVSLYGPRFAYKYIIEVLDRGLGPSTQMSEVNISIKLLNEILLSSK 244
Query: 245 HRFGEQLWRVAPSVLEYS---------KDTDEELREHCLQALEAFVLKCPKEVQPHIPTI 295
++ +V +Y+ ++ +EL + L+ L + + P +
Sbjct: 245 KEKDSSTSFISTAVADYTNKILSLLKKEEAPDELTQKLLEVLGLLLEYQQVNILKIWPEL 304
Query: 296 IDLCLKMITYDPNYNYXXXXXXXXXXXXXXXXTXXXXXXXXXXXXXXXXXXXMSWKVRRA 355
L + I+YDPN +SW VRR
Sbjct: 305 HGLLISKISYDPN---------LISDTNDEDDIADFLEEMSDYSSIYEDEEDVSWIVRRE 355
Query: 356 AAKCLESVIATRHELLAEMYHTVSPALIARFKEREENV 393
+ K + SVI +R E L + + +++++ +REE+V
Sbjct: 356 SLKVVLSVILSRLEYLPIVLQALGTSVVSKLNDREESV 393
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 41.9 bits (94), Expect = 6e-04
Identities = 60/251 (23%), Positives = 103/251 (41%), Gaps = 11/251 (4%)
Query: 49 VVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEYQVEGIVDTLCANMLSDTEQLRDISSI 108
V+ LL +L + VQ CL PLV K E L +N L ++ L D
Sbjct: 1324 VMDSLLSVLSTPSESVQLAVAVCLPPLVKKSLGKSKE--YYELLSNKLMNSTSLAD--QK 1379
Query: 109 GLKTVISELPLGSNTLAANVCKKITGKLSSAIEKQEDVSVQLEALDILADLLSRFGGLLI 168
G ++ L G + A I LS I +++ + + AL + SR G+
Sbjct: 1380 GAAYGLAGLVKGYG-IKAFQDFNILDSLSELISNRQNATHRQVAL-FAVEAFSRILGIYF 1437
Query: 169 S-FHPMLLNSLLPQLASPRQAVRKRTIVALSHLVMSCNASLYNKLIDHLLEGLXXXXXXX 227
+ P LL LL VR+ T+ A+ ++ +A L+ LL+GL
Sbjct: 1438 EPYLPDLLPLLLTSFGDNANEVREATMDAVKQIMSQLSAFGVKLLLPTLLDGL-NEYNWR 1496
Query: 228 XXRTHIQCIASICRQAGHRFGEQLWRVAPSVLEYSKDTDEELREHCLQALEAF--VLKCP 285
+ ++ + + A + L + P + E D+ ++R ++L F V+ P
Sbjct: 1497 SKKASVEILGLMSYMAPKQLSVFLPTIIPKLSEVLTDSHSQVRNTANKSLLRFGDVISNP 1556
Query: 286 KEVQPHIPTII 296
E+Q +PT++
Sbjct: 1557 -EIQTLVPTLL 1566
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 38.7 bits (86), Expect = 0.005
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 144 EDVSVQLEALDILADLLSRFGGLLISFHPMLLNSLLPQLASPRQAVRKRTIVALSHLVMS 203
++ +L AL+ + L R GG LI+ H + +LL QL+ P V RT+ L+H+ +S
Sbjct: 448 DNEETRLCALEWVLLLQRRTGGKLINMHDPIFQTLLLQLSDPSDLVVSRTLELLAHIAIS 507
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/56 (23%), Positives = 30/56 (53%)
Query: 253 RVAPSVLEYSKDTDEELREHCLQALEAFVLKCPKEVQPHIPTIIDLCLKMITYDPN 308
R+ ++++ + ++E L+ L F+ PK+V IP +++ L +++ D N
Sbjct: 339 RILEIIIDHLGSSVPLIQEKALKWLFEFIYIAPKDVLLQIPKVLENLLPLMSNDEN 394
>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 910
Score = 31.5 bits (68), Expect = 0.78
Identities = 26/140 (18%), Positives = 55/140 (39%), Gaps = 8/140 (5%)
Query: 176 NSLLPQLASPRQAVRKRTIVALSHLVMSCNASLYNKLIDHLLEGLXXXXXXXXXRTHIQC 235
++++ L P Q +R + ++ ++ S + +++ L+E L
Sbjct: 96 STVIRGLCDPEQLIRGISGNVITTIISRWGISTWPEVLPQLMEMLSSPASTTQEGA-FSA 154
Query: 236 IASICRQAGHRFGEQ------LWRVAPSVLEYSKDTDEELREHCLQALEAFVLKCPKEVQ 289
+ IC + L + P +E ++ + ++R L L FVL + +
Sbjct: 155 LTKICEDSAQELDRDFNGTRPLDFMIPRFIELARHENPKIRTDALFCLNQFVLIQSQSLY 214
Query: 290 PHIPTIIDLCLKMIT-YDPN 308
HI T ++ C + T PN
Sbjct: 215 AHIDTFLETCYALATDVSPN 234
>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 31.1 bits (67), Expect = 1.0
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 10/118 (8%)
Query: 46 EREVVKMLLRLLEDKNGEVQNLAVKCLGPLV----NKVKEYQVEGIVDTLCANMLSDTEQ 101
+RE ++ +L LL+ + E+Q A LG L NK ++ G+ D L M+S +
Sbjct: 83 DRETIEPVLFLLQSPDAEIQRAASVALGNLAVNAENKALVVKLNGL-DLLIRQMMSPHVE 141
Query: 102 LRDISSIGLKTVISELPLGSNTLAANVCKKITGKLSSAIEKQEDVSVQLEALDILADL 159
++ +++G T ++ L + +A + G L + + K +D+ VQ A L ++
Sbjct: 142 VQ-CNAVGCITNLATLDENKSKIAHS---GALGPL-TRLAKSKDIRVQRNATGALLNM 194
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
Query: 7 HIAHLLEKMTSNDKDFRFMATNDLMTELQKDSIKLDDDSEREVVKMLLRLLE-DKNGEVQ 65
++ + +K+ FR + DL ELQK+SIK + ++ + +L D V
Sbjct: 33 NLQQIFQKIIQERGPFRDLKEEDLQKELQKESIKDESSAKSSETENVLEFATLDSKRNVN 92
Query: 66 NLAVKCLGPLVNKVKEYQVEGIVDTLCANMLSDTEQL 102
+ V+ + K + + I T C+ L T L
Sbjct: 93 DTEVESMDSQAYKKELIEQIMIAQTECSLALDMTSLL 129
>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein subunit
S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 224
Score = 29.9 bits (64), Expect = 2.4
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 1168 ARLAQLCPAVVLQRLESLVEPLRATCTMKVKANSVKQEYEKQDELKRSALRATAALMQIP 1227
+RL QL +V LE+ LR +K + EYE D+ ++ + +
Sbjct: 130 SRLIQLY-SVNPVTLETFFSYLRKCNMWDLKLQAKAYEYESIDDALKNFESQSKSTDNFK 188
Query: 1228 EADKNPHLMDFVTQ-IRSLPELQPIFESILKDSS 1260
E P D +TQ L PI++ +LK+SS
Sbjct: 189 ELLNGPSKKDIITQNAEKLLRNDPIYKDLLKNSS 222
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 262 SKDTDEELREHCLQALEAFVLKCPKEV-QPHIPTIIDLCLKMITYDP 307
S+DT R+ + + +L P++ P +P +IDL ++IT DP
Sbjct: 1437 SRDTQLGARQSNICRITILMLSSPRDFFLPSLPPLIDLVKRLITSDP 1483
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 29.1 bits (62), Expect = 4.2
Identities = 30/91 (32%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 89 DTLCANMLSDTEQLRDISSIGLKTVISELPLGSNTLAANVCKKITGKLSSAIEKQEDVSV 148
D +N+ TE+ S+ L ISEL TL L+S IE+Q VS
Sbjct: 467 DVFTSNVFDATEE----SANELAIRISELQAEVGTLLLEATS-----LASIIEQQTPVSP 517
Query: 149 QLEALDILADLLSRFGGLLISFHPMLLNSLL 179
+ +++ADL R L SF P L LL
Sbjct: 518 EAFKQELVADLNYRLDYLRKSFQPELSTLLL 548
>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 594
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/70 (22%), Positives = 36/70 (51%)
Query: 151 EALDILADLLSRFGGLLISFHPMLLNSLLPQLASPRQAVRKRTIVALSHLVMSCNASLYN 210
E L++LA +S+ L +++ +++P+ A P+ A+ + ++ ++ N +LY
Sbjct: 333 EFLELLAKKVSKKPATLEAYNKARPQTVVPKAAEPKAALNRVEVMRQIQGLVDSNTTLYA 392
Query: 211 KLIDHLLEGL 220
+ D GL
Sbjct: 393 ETGDSWFNGL 402
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 1 MANVSYHIAHLLEKMTSNDKDFRFMATNDLMTELQKDSIKLDDD 44
M NV +LEK++S+ F+ T+ +E K+ I DD+
Sbjct: 709 MKNVGRAYPEILEKLSSSSGSDEFLETSSRTSENTKEKIDKDDE 752
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 37 DSIKLDDDSER-EVVKMLLRLLEDKNGEVQNLAVKCLGPLVNK 78
D +KL ++SE + L LL DKN V+N ++ LVNK
Sbjct: 1096 DDLKLSENSEDWGLFSKLCNLLNDKNIVVRNQSLSLFHQLVNK 1138
>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 875
Score = 28.3 bits (60), Expect = 7.3
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 6/107 (5%)
Query: 12 LEKMTSN-DKDFRFMATNDLMTELQKDSIKLDDDSEREVVKMLLRLLEDKNGEVQNLAVK 70
++K SN D+ RF+ T + LQ+ ++D + ++K +LR L+ K+ V+ +
Sbjct: 47 VKKGNSNADRVLRFLVT--FVNYLQQKDPEID--IVQPILKHILRGLDAKDKTVRYRCCQ 102
Query: 71 CLGPLVNKVKEYQVEGIVDTLCANMLSDTEQLRDISSIGLKTVISEL 117
+ +VN VKE + + +TL +LS I + +S L
Sbjct: 103 IIARVVNCVKEID-DDLYNTLKEKLLSRVLDRESIVRLEAVVALSRL 148
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 28.3 bits (60), Expect = 7.3
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 58 EDKNGEVQNLAVKC-LGP-LVNKVKEYQVEGIVDTLCANMLSDTEQLRDISSIGLKTVIS 115
E+K ++Q+ +K + P L+ K++ +G+ D T+ ++ G+ V S
Sbjct: 259 EEKTSDIQDRKIKTPIKPSLLGKIRSSVNKGMTDVASQVNRGMTDVASQVNK-GVNGVAS 317
Query: 116 ELPLGSNTLAANVCKKITGKLSSAIEK 142
++ G N +A V K +TG ++S + K
Sbjct: 318 QVNKGMNGVANQVNKGVTG-VASQVRK 343
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/51 (23%), Positives = 26/51 (50%)
Query: 254 VAPSVLEYSKDTDEELREHCLQALEAFVLKCPKEVQPHIPTIIDLCLKMIT 304
+ P ++ D D ++R+ L AL ++ P EV H ++ L ++++
Sbjct: 384 IFPIIINGLCDNDMDVRQAALLALSQIAVEIPTEVSKHHAQLLPLVFELMS 434
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 1190 RATCTMKVKA-NSVKQEYEKQDELKRSALRATAALMQIPEADKNPHLMDFVTQIRSLPEL 1248
+A T+K + N V + K LRA L I D N H+ D Q+ +P L
Sbjct: 457 QAVLTLKARGQNDVINFHYMDPPSKEGLLRALEHLYSIGALDDNGHINDLGYQMSLIPLL 516
Query: 1249 QPIFESIL 1256
+ ++L
Sbjct: 517 PSLARAVL 524
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.322 0.135 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,781,288
Number of Sequences: 5004
Number of extensions: 176630
Number of successful extensions: 577
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 551
Number of HSP's gapped (non-prelim): 36
length of query: 1273
length of database: 2,362,478
effective HSP length: 81
effective length of query: 1192
effective length of database: 1,957,154
effective search space: 2332927568
effective search space used: 2332927568
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)
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