Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002649-TA|BGIBMGA002649-PA|IPR011030|Lipovitellin,
superhelical, IPR000357|HEAT, IPR013932|TATA-binding protein
interacting (TIP20)
(1273 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0502 - 3659564-3659660,3659923-3660061,3660161-3660238,366... 451 e-126
02_01_0522 + 3779404-3779439,3779594-3779709,3780120-3780327,378... 130 7e-30
03_05_0944 + 29046793-29046922,29048091-29048464,29048556-290486... 42 0.003
02_05_0691 - 30949234-30949243,30949613-30950001,30950425-309504... 36 0.21
11_01_0553 - 4368233-4368320,4368427-4368514,4368595-4368668,436... 33 1.5
01_01_0548 - 4033077-4033349,4034007-4034261,4034362-4034533,403... 32 2.6
11_06_0145 - 20615044-20617167,20617444-20618076 32 3.4
02_01_0353 + 2545982-2549833 32 3.4
07_03_1562 - 27738369-27738568,27738767-27738962,27739079-277392... 31 4.5
07_03_0997 - 23203166-23203330,23203627-23203693,23203771-232038... 31 4.5
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342... 31 5.9
12_02_1118 + 26210322-26212559 31 7.9
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 31 7.9
05_03_0582 - 15738503-15739301,15739385-15739642,15740585-157406... 31 7.9
03_01_0278 + 2136522-2137286 31 7.9
02_05_1130 - 34319558-34319603,34320236-34320335,34320498-343205... 31 7.9
02_02_0565 + 11550071-11550909,11551603-11553133,11553205-11553537 31 7.9
>02_01_0502 - 3659564-3659660,3659923-3660061,3660161-3660238,
3660486-3660654,3660757-3660873,3660956-3661102,
3661203-3661388,3661472-3661720,3662196-3662432,
3662511-3662673,3662748-3662866,3662976-3663068,
3663595-3663735,3663813-3663896,3663974-3664084,
3664162-3664260,3664501-3664623,3664908-3664958,
3665152-3665275,3665357-3665514,3665595-3665709,
3665931-3666060,3666163-3666328,3667047-3667136,
3667650-3667857,3668270-3668439,3668542-3668577
Length = 1199
Score = 451 bits (1111), Expect = e-126
Identities = 263/671 (39%), Positives = 383/671 (57%), Gaps = 16/671 (2%)
Query: 593 KQFIPAMYECNLVRLRATDMDQEVKERAIAACGQLLCHFGDYLQNELPVCLPIFLERLRN 652
+ +I +Y+ L RL D DQEVKE AI+ ++ FGD LQ ELP CLPI ++R+ N
Sbjct: 534 RPYIGPIYKAILARLANQDQDQEVKECAISCMSLVVFTFGDGLQRELPACLPILVDRMGN 593
Query: 653 EITRLTTVKALTKVASSPLRIDLTPILSDAVPILGSFLRKNQRAXXXXXXXXXXXXXQNY 712
EITRLT VKA +A SPLRIDL+ +L + L +FLRK RA Y
Sbjct: 594 EITRLTAVKAFAVIAKSPLRIDLSCVLDHVISELTAFLRKANRALRQATLGTLNSLVVAY 653
Query: 713 SHAISIELLSKVLMEVPALVCEQDLHCAQTALALVRSACLRCPAALTAD--ARYALTPKI 770
I ++ E+ L+ + DLH AL L + + + RY + P+
Sbjct: 654 GGQIGSSY-ETIIAELSTLISDMDLHMTALALELCCTIMVDRKSIQNVGLAVRYKVLPQA 712
Query: 771 LALAKSPLLQGGALKAMLGVLSALVSADVAGCSRRELLALLVMPVRRLQEHNATAHHIKQ 830
L L +S LLQG AL+A+ ++LV + A S LL L+ + Q KQ
Sbjct: 713 LILIRSALLQGQALQALQRFFASLVQS--ANTSFDTLLDSLISTAKPSQSGGLA----KQ 766
Query: 831 AFHSLSKCXXXXXXXXX----XXXXXXXRGFLRDAAHPPSDAHHMFSLLALAEIGRHLDL 886
A S+++C +G L+D + S HM +LL L EIGR DL
Sbjct: 767 ALSSIAQCVAVLCLAAGDQKCASTIEMLKGILKDDSTTNSAKQHM-ALLCLGEIGRRKDL 825
Query: 887 SSVPNLKEVLLNSFTPSSEEVKSAASYALGSVAVGNLPEFLPFILGEIEAQPKRQYLLLH 946
S+ ++ +++ SF EE+KSAASYALG++AVGNL ++LPFIL +I+ Q K+QYLLLH
Sbjct: 826 SNHAQIENIVIESFQSPFEEIKSAASYALGNIAVGNLSKYLPFILNQIDNQQKKQYLLLH 885
Query: 947 SLREIISSESCTPEGVEALRPF-IPQIWVQLSKHCQCAEEGSRNVVAXXXXXXXXXXXXX 1005
SL+E+I+ +S G L+ I +I L HC+ EEG RNVVA
Sbjct: 886 SLKEVIARQSVDHTGQSELQDSNIEKILALLFNHCESEEEGVRNVVAECLGKIALIEPRK 945
Query: 1006 XXXXXXXXXKSPEPLTRTTAVTAVKFTISDQPQAIDGLLRGCMCELLVPLRDAELGVRRV 1065
SP TR T A+K++I ++P ID ++ + L+ ++D++ VRR
Sbjct: 946 LIPALKERTSSPAANTRATVAIAIKYSIVERPGKIDEIMYSEISTFLMLIKDSDRHVRRA 1005
Query: 1066 ALVAFNSAAHNKPSLVRDLLPQVLPTIYAETKVKKELIREVEMGPFKHSVDDGLDLRKAA 1125
A++A ++AAHNKP+L++ LLP++LP +Y +T VK+ELIR V++GPFKH VDDGL+LRKAA
Sbjct: 1006 AVLALSTAAHNKPNLIKGLLPELLPLLYDQTVVKQELIRTVDLGPFKHVVDDGLELRKAA 1065
Query: 1126 FECMYTLLGTCLDRLDVFEFL-RHVEDGLRDHYDIKMLTYLMCARLAQLCPAVVLQRLES 1184
FEC+ TLL +CLD+++ F+ + GL DHYD+KM +L+ ++LA CP+ VL L+S
Sbjct: 1066 FECVDTLLDSCLDQVNPSSFIVPFLLSGLGDHYDVKMPCHLILSKLADKCPSAVLAVLDS 1125
Query: 1185 LVEPLRATCTMKVKANSVKQEYEKQDELKRSALRATAALMQIPEADKNPHLMDFVTQIRS 1244
LV+P+ T K K ++VKQE ++ +++ RSALRA AAL +I D + + + +I +
Sbjct: 1126 LVDPIEKTINHKPKGDAVKQEVDRNEDMIRSALRAIAALSRISGNDYSMRFKNLMNKIMA 1185
Query: 1245 LPELQPIFESI 1255
P L + S+
Sbjct: 1186 SPPLADKYNSV 1196
Score = 254 bits (622), Expect = 3e-67
Identities = 171/484 (35%), Positives = 256/484 (52%), Gaps = 59/484 (12%)
Query: 1 MANVSYHIAHLLEKMTSNDKDFRFMATNDLMTELQKDSIKLDDDSEREVVKMLLRLLEDK 60
MAN++ I +LEKMT DKD+R+MAT+DL++EL K+ K D D E ++ +L+ LED
Sbjct: 1 MANMN--ITTILEKMTGKDKDYRYMATSDLLSELNKEGFKADQDIEPKLTTTVLQQLEDA 58
Query: 61 NGEVQNLAVKCLGPLVNKVKEYQVEGIVDTLCANMLSDTEQLRDISSIGLKTVISELPLG 120
+G+V LAVKCL PLV KV E +V + + LC +L+ +Q RD +SI LKT+I E+
Sbjct: 59 SGDVSGLAVKCLAPLVKKVGEDRVVEMTNILCDKLLNGKDQHRDTASIALKTIIVEVTTT 118
Query: 121 SN------TLAANVCKKIT--GKLSSAIEKQ--------------------EDVSVQLEA 152
S +LA + K T G L + I + + V+ E
Sbjct: 119 SLAEKILVSLAPQLIKGATASGDLITVITIESFSLLIKFTAFLMVHYTFEGKSAEVKCEC 178
Query: 153 LDILADLLSRFGGLLISFHPMLLNSLLPQLASPRQAVRKRTIVALSHLVMSCNASLYNKL 212
LDIL D+L RFG L+ H +L +LL QL+S + +VRK++I ++ L + L K
Sbjct: 179 LDILGDVLHRFGNLITKDHDSMLTALLSQLSSNQASVRKKSISCIASLAACLSDDLLAKA 238
Query: 213 IDHLLEGLXXXXXXXX-XRTHIQCIASICRQAGHRFGEQLWRVAPSVLEY---SKDTDEE 268
+++ L RT+IQ I ++ R G+RFG L P ++ Y + + DEE
Sbjct: 239 TFEVVQLLKNRSAKSEIARTNIQMIGALSRSVGYRFGPHLAEAVPLLINYCTSASENDEE 298
Query: 269 LREHCLQALEAFVLKCPKEVQPHIPTIIDLCLKMITYDPNYNYXXXXXXXXXXXXXXXXT 328
LRE+ LQALE+F+L+CP+++ P+ I++L L+ I+YDPN+
Sbjct: 299 LREYSLQALESFMLRCPRDISPYCEGILNLALEYISYDPNF--------TDSMEEDTDDE 350
Query: 329 XXXXXXXXXXXXXXXXXXXMSWKVRRAAAKCLESVIATRHELLAEMYHTVSPALIARFKE 388
SWKVRRA+AKCL ++I +R E+L++MY P LI RF+E
Sbjct: 351 AQDEEDDDESANEYTDDEDASWKVRRASAKCLSAIIVSRPEMLSKMYLEACPKLIERFRE 410
Query: 389 REENVKCDILSAYTALLRATRPPPALQISGTPADNSPQALLIQTVSSIVRGALRVIRGRS 448
REENVK +T P A+ + SP+ LL Q V +V+ R +R +S
Sbjct: 411 REENVK------------STEPMLAILLL-----FSPRWLLKQEVPKVVKSINRQLREKS 453
Query: 449 VRAR 452
++ +
Sbjct: 454 IKTK 457
Score = 46.8 bits (106), Expect = 1e-04
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 474 VARVVRALTPALLDKTTASSMKIETLVFIGCLVRGQG-AGMREHXXXXXXXXXXSVHDPF 532
+ R +R + DK++ S++KIE LVF ++ A + ++ D +
Sbjct: 445 INRQLREKSIKTKDKSSTSNLKIEALVFTRLVMASHSPAVFHPYIQALSGPILSAIGDRY 504
Query: 533 YKVTAEALRVLQLLVKIMRP 552
YKVTAEALRV LV+++RP
Sbjct: 505 YKVTAEALRVCGELVRVLRP 524
>02_01_0522 +
3779404-3779439,3779594-3779709,3780120-3780327,
3781446-3781611,3781713-3781842,3782496-3782619,
3782794-3782844,3783140-3783262,3783504-3783602,
3783680-3783790,3783868-3783957,3784035-3784175,
3787913-3788116,3788154-3788290,3788429-3788662,
3789535-3789829,3789963-3790017,3790144-3790245,
3790581-3790669,3790807-3790899
Length = 867
Score = 130 bits (314), Expect = 7e-30
Identities = 80/231 (34%), Positives = 122/231 (52%), Gaps = 5/231 (2%)
Query: 27 TNDLMTELQKDSIKLDDDSEREVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEYQVEG 86
T L L K+ K D D E ++ +L+ LED +GEV LAVKCL PLV KV E V
Sbjct: 7 TTILEKRLNKEGFKADQDIEPKLTTTVLQQLEDTSGEVSGLAVKCLAPLVKKVGEDSVVE 66
Query: 87 IVDTLCANMLSDTEQLRDISSIGLKTVISELPLGSNTLAANVCKKITGKLSSAIEKQEDV 146
+ + LC +L+ +Q RD +SI LKT+I+E+ + TLA + + +L +
Sbjct: 67 MTNILCDKLLNGKDQHRDTASIALKTIIAEVT--TTTLAEKILVSLAPQLIKGATAGKSA 124
Query: 147 SVQLEALDILADLLSRFGGLLISFHPMLLNSLLPQLASPRQAVRKRTIVALSHLVMSCNA 206
V+ E LDIL D+L RFG L+ H +L +LL QL+S + +VRK++I ++ L +
Sbjct: 125 EVKCECLDILGDVLHRFGNLITKDHDCMLTALLSQLSSNQASVRKKSISCIASLAACLSD 184
Query: 207 SLYNKLIDHLLEGL-XXXXXXXXXRTHIQCIASICRQAGHRFGEQ--LWRV 254
L K +++ L RT+IQ I ++ A ++ W+V
Sbjct: 185 DLLAKATFEVVQLLKNRSAKSEIARTNIQMIGALSESANEYTDDEDASWKV 235
Score = 71.3 bits (167), Expect = 5e-12
Identities = 37/76 (48%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 593 KQFIPAMYECNLVRL--RATDMDQEVKERAIAACGQLLCHFGDYLQNELPVCLPIFLERL 650
+ +I +Y+ L RL + D DQEVKE AI+ L FGD LQ ELP CLP+ ++R+
Sbjct: 395 RPYIGPIYKAILARLANQDQDQDQEVKECAISCMSLALSTFGDGLQRELPACLPVLVDRM 454
Query: 651 RNEITRLTTVKALTKV 666
NEITRLT VK L +
Sbjct: 455 GNEITRLTAVKILESI 470
Score = 63.7 bits (148), Expect = 9e-10
Identities = 41/104 (39%), Positives = 60/104 (57%), Gaps = 17/104 (16%)
Query: 349 SWKVRRAAAKCLESVIATRHELLAEMYHTVSPALIARFKEREENVKCDILSAYTALLRAT 408
SWKVRRA+AKCL ++I +R E+L++MY P LI F+EREENVK +T
Sbjct: 232 SWKVRRASAKCLYAIIVSRPEMLSKMYLEACPKLIEWFREREENVK------------ST 279
Query: 409 RPPPALQISGTPADNSPQALLIQTVSSIVRGALRVIRGRSVRAR 452
P A+ + SP+ LL Q V +V+ R +R +S++ +
Sbjct: 280 EPMLAILLL-----FSPRWLLKQEVPKVVKSINRQLREKSIKTK 318
Score = 44.4 bits (100), Expect = 6e-04
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 474 VARVVRALTPALLDKTTASSMKIETLVFIGCLVRGQG-AGMREHXXXXXXXXXXSVHDPF 532
+ R +R + DK++ S++KIE LVF ++ A + ++ D +
Sbjct: 306 INRQLREKSIKTKDKSSTSNLKIEALVFTRLVMASHSPAVFHPYIQALSGPILSAIGDRY 365
Query: 533 YKVTAEALRVLQLLVKIMRP 552
KVTAEALRV + LV+++RP
Sbjct: 366 DKVTAEALRVCEELVRVLRP 385
>03_05_0944 + 29046793-29046922,29048091-29048464,29048556-29048687,
29048829-29049210,29049370-29049513,29049593-29049777,
29049925-29050051,29050603-29050676,29051071-29051147,
29051256-29051292,29051453-29051619,29051800-29051983,
29052053-29052130,29052451-29052570,29052648-29052707,
29053057-29053179,29053848-29053941,29054019-29054197,
29054737-29055039,29055373-29055474,29055553-29055693,
29055831-29055995,29056168-29056344,29056432-29056554,
29057787-29057867,29057983-29058099,29058214-29058386,
29058846-29058923,29058994-29059141,29059755-29059877,
29060015-29060071,29060145-29060255,29060382-29060573,
29060690-29060863,29061263-29061373,29061462-29061531,
29061734-29061812,29061898-29062000,29062086-29062256,
29062348-29062470,29062548-29062661,29062935-29063041,
29063117-29063168,29063245-29063351,29063589-29063703,
29063819-29063929,29064016-29064153,29064230-29064352,
29064535-29064606,29064774-29064886,29066780-29067110,
29067199-29067381,29068669-29068863,29068943-29069110,
29069208-29069340,29069511-29069595,29069726-29069765
Length = 2591
Score = 41.9 bits (94), Expect = 0.003
Identities = 59/270 (21%), Positives = 106/270 (39%), Gaps = 16/270 (5%)
Query: 42 DDDSEREVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEYQVEGIVDTLCANMLS-DTE 100
DD VV+ LL +L + VQ CL PL+ K+ + + +V L M+ +
Sbjct: 1254 DDPKVHSVVEKLLDVLNTPSEAVQRAVSDCLSPLMVS-KQEEAQALVSRLLDRMMKCEKY 1312
Query: 101 QLRDISSIGLKTVISELPLGSNTLAANVCKKITGKLSSAIEKQEDVSVQLEALDILADLL 160
R ++ GL V+ + S I L +E + + AL L
Sbjct: 1313 GERRGAAFGLAGVVKGFGISSLKKYG-----IAAILQQGLEDRASAKSREGALLGFECLC 1367
Query: 161 SRFGGLLISFHPMLLNSLLPQLASPRQAVRKRTIVALSHLVMSCNASLYNKLIDHLLEGL 220
+ G L + +L LL + AVR+ A ++ ++ LL+GL
Sbjct: 1368 EKLGKLFEPYVIQMLPLLLVSFSDQVLAVRESAECAARAMMSQLTGHGVKLVLPSLLKGL 1427
Query: 221 XXXXXXXXXRTHIQCIASICRQAGHRFGEQLWRVAPSVLEYSKDTDEELREHCLQALE-- 278
++ +Q + ++ A + + L ++ P + E DT +++ AL+
Sbjct: 1428 -EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQAAGQTALQQV 1486
Query: 279 AFVLKCPKEVQPHIPTIIDLCLKMITYDPN 308
V+K P I ++ + L +T DPN
Sbjct: 1487 GSVIK-----NPEISALVPILLSALT-DPN 1510
>02_05_0691 -
30949234-30949243,30949613-30950001,30950425-30950449,
30950594-30950688,30950842-30951359,30951652-30951736,
30951842-30952633
Length = 637
Score = 35.9 bits (79), Expect = 0.21
Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
Query: 730 ALVCEQDLHCAQTALALVRSACLR--CPAALTADARYALTPKILALAKSPLLQGGALKAM 787
AL+ EQD CAQTA AL +A + P A A + L P++L LL+ A KA
Sbjct: 137 ALLHEQD-QCAQTAAALATAAAVEASAPTADLASYIHKLQPRLL-----KLLRSNAFKAK 190
Query: 788 LGVLSAL-VSADVAGCS 803
++S + VSA AG +
Sbjct: 191 PALISLIGVSASAAGAA 207
>11_01_0553 - 4368233-4368320,4368427-4368514,4368595-4368668,
4369000-4369160,4369233-4369322,4369406-4369480,
4369569-4369640,4369719-4369891,4369964-4370078,
4370274-4370387,4370582-4370661,4370755-4370842,
4370941-4370997,4371111-4371176,4371254-4371349,
4371459-4371566,4371941-4372039,4372108-4372227,
4372399-4372437,4372940-4373026,4373276-4373347,
4373443-4373509,4374455-4374546,4374631-4374708,
4374785-4374922,4375029-4375164,4375306-4375468,
4375690-4375849,4375950-4376056,4376149-4376259,
4377850-4378159
Length = 1107
Score = 33.1 bits (72), Expect = 1.5
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Query: 1047 CMCELLVPLRDAELGVRRVALVAFNSA-AHNKPSLVRDLLPQVLPTIYAETKVKKELIRE 1105
C C L+ P +L + ++ S KP + + +LP++L + A K K ++E
Sbjct: 625 CYCTLVPPEDARKLNLPPESVNKTPSGETFVKPDVQKGILPEILEELLAARKRAKADLKE 684
Query: 1106 VEMGPFKHSVDDGLDLR-KAAFECMYTLLGTCLDRLDVFE 1144
+ PF+ +V DG L K + +Y G + +L E
Sbjct: 685 AK-DPFERAVLDGRQLALKISANSVYGFTGATVGQLPCLE 723
>01_01_0548 - 4033077-4033349,4034007-4034261,4034362-4034533,
4034616-4034839,4035168-4035332,4035591-4035881,
4035971-4036303,4036391-4036485,4036570-4036689,
4036778-4036934,4037176-4037279,4037383-4037543,
4037636-4037952,4038655-4038936,4039020-4039321,
4039453-4039543,4040227-4040280,4040367-4040684,
4041008-4041092,4041178-4041266,4041474-4041594,
4042136-4042431
Length = 1434
Score = 32.3 bits (70), Expect = 2.6
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 733 CEQ-DLH--CAQTALALVRSACLRCPAALTADARYALTPKILALAKSPLLQGGALKAMLG 789
CEQ D+H C +L+ SACLR P+ + + R +++ L + L GAL + G
Sbjct: 941 CEQNDVHSPCLTVIESLLYSACLRLPSHVDVNTRRVFVEEVMELVELNAL-SGALVGLPG 999
Query: 790 V 790
V
Sbjct: 1000 V 1000
>11_06_0145 - 20615044-20617167,20617444-20618076
Length = 918
Score = 31.9 bits (69), Expect = 3.4
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 744 LALVRSACLRCPAALTA--DARYALTPKILALAKSPLLQGGALKAMLGVLSALVSADVAG 801
LA VR C+R A + A R A A+ LL+ G L++ G + L+ D+ G
Sbjct: 46 LAHVRD-CVRTRARVAARRGRRLATAAAWTEEAEIYLLRFGELRSAHGRIPRLIFWDLLG 104
Query: 802 CSRRELLALLVMP-VRRLQE 820
C R +A L+MP V+RL E
Sbjct: 105 CYRVSKVASLMMPQVKRLCE 124
>02_01_0353 + 2545982-2549833
Length = 1283
Score = 31.9 bits (69), Expect = 3.4
Identities = 39/179 (21%), Positives = 82/179 (45%), Gaps = 15/179 (8%)
Query: 20 KDFRFMATNDLMTELQKDSIKLDDDSEREVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKV 79
+D+++ T L+ E +++ + ++ ER+++K+LL++ KNG L L +K
Sbjct: 448 EDYQYFGT--LLNEEEEEQLSPEEQKERKIMKLLLKV---KNGTPPQRKT-ALRQLTDKA 501
Query: 80 KEYQVEGIVDTLCANMLSDTEQLRDISSIGLKTVISELPLGSNTLAANVCKKITGKLSSA 139
+E+ + + + ++ T L D L VI + + L KI +
Sbjct: 502 REFGAGPLFNKILPLLMQPT--LEDQERHLLVKVIDRVLYKLDELVRPFVHKILVVIEPL 559
Query: 140 IEKQEDVSVQLEALDILADLLSRFGGLLISFHPMLLNSLLPQLASPRQAVRKRTIVALS 198
+ ED ++E +I+++ LS+ GL ++ ++ P + + + VR T A S
Sbjct: 560 L-IDEDYYARVEGREIISN-LSKAAGL-----ATMIAAMRPDIDNIDEYVRNTTARAFS 611
>07_03_1562 - 27738369-27738568,27738767-27738962,27739079-27739230,
27739775-27739832,27739923-27740038,27740117-27740237,
27740348-27740635,27740817-27740987,27741091-27741741,
27742515-27742676,27742764-27743904,27743992-27744152,
27744239-27744564,27745678-27745825
Length = 1296
Score = 31.5 bits (68), Expect = 4.5
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 136 LSSAIEKQEDVSVQLEALDILADLLSRFGGLLISFHPMLLNSLLPQLASPRQAVRKRTIV 195
L +A E V+ L DL+ RF LL + + +L P +VRK T++
Sbjct: 949 LFTAAESAPSEVVRSNCTIALGDLVVRFPNLLEPW----TEHIYARLRDPSASVRKNTVL 1004
Query: 196 ALSHLVMS 203
+SHL+++
Sbjct: 1005 VISHLILN 1012
>07_03_0997 -
23203166-23203330,23203627-23203693,23203771-23203862,
23204820-23204956,23205050-23205116,23205212-23205278,
23205356-23205441,23206061-23206153,23206337-23206522,
23207316-23207372,23207455-23207582,23207662-23207731,
23207815-23207950,23208378-23208529,23208606-23208680,
23208765-23208929,23209063-23209128,23209229-23209333,
23209929-23210132,23210462-23211715
Length = 1123
Score = 31.5 bits (68), Expect = 4.5
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 15/142 (10%)
Query: 864 PPSDAHHMFSLLALAEIGRHLDLSSVPNLKEV---LLNSFTPSSEEVKSAASYALGSVAV 920
P HH +L+ LA+I + NL++V +LN F V+ AA A+G ++
Sbjct: 397 PEWQKHHA-ALITLAQIAEGCAKVMLKNLEQVVSMILNGFQHPHARVRWAAINAIGQLST 455
Query: 921 GNLPEF--------LPFILGEIEAQPKRQYLLLHSLREIIS-SESCTPEGVEA-LRPFIP 970
P+ LP + ++ + + H+ I++ SE+CTPE + L +
Sbjct: 456 DLGPDLQVNYHQQVLPALANAMD-DFQNPRVQAHAASAILNFSENCTPEILTPYLDGIVT 514
Query: 971 QIWVQLSKHCQCAEEGSRNVVA 992
++ V L Q +EG+ +A
Sbjct: 515 KLLVLLQNGKQMVQEGALTALA 536
>07_03_1479 -
26832976-26833095,26833737-26833943,26834104-26834252,
26834330-26834732,26834840-26835118,26835285-26835716,
26836362-26836838,26837171-26837212,26837285-26837545,
26837637-26838938,26839146-26839575,26839643-26840046,
26840360-26840716,26840842-26841102,26841494-26842141,
26842231-26842452,26842547-26842768,26842860-26843009,
26843739-26844111,26844467-26844689,26845167-26845425,
26845585-26845920,26846013-26846999,26848395-26849624,
26849706-26849768,26849858-26849910,26849998-26850079,
26850520-26850588,26851070-26851129,26851205-26851267,
26851993-26852101,26852742-26852827,26853120-26853847,
26854613-26854676
Length = 3716
Score = 31.1 bits (67), Expect = 5.9
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 284 CPKEVQPHIPTIIDLCLKMIT 304
C + +QPH+P I+++C+K T
Sbjct: 585 CERTLQPHVPVIMEVCMKSAT 605
>12_02_1118 + 26210322-26212559
Length = 745
Score = 30.7 bits (66), Expect = 7.9
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 795 VSADVAGCSRRELLALLVMPVRRLQEHNATAHHIKQAFHSLSK 837
+ DV + + A++VMP ++ +H+ T + A+H+++K
Sbjct: 489 IHRDVIDSATAKRAAIVVMPYHKMLQHDGTFQSLGSAYHAINK 531
>10_08_0043 -
14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 30.7 bits (66), Expect = 7.9
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 10/123 (8%)
Query: 39 IKLDDDSEREVVKM---LLRLLEDKNGEVQNLAVKCLGPLVNKVKEYQVEGIVDTLCA-N 94
+K D E+V + + RLL + N Q + + NK E +++ + DT+ N
Sbjct: 190 VKGSDAISNEMVNLQQEISRLLAESNSMKQQILSE--SERANKA-ENEIQVLKDTILKLN 246
Query: 95 MLSDTEQLR-DISSIGLKTVISELPLGSNTLAANVCKKITG--KLSSAIEKQEDVSVQLE 151
DT L+ + S+ L T+ SEL + L + T KLSSA + ++ +LE
Sbjct: 247 SDKDTSLLQYNQSTERLSTLESELSKAQDDLKKLTDEMATEVQKLSSAEARNSEIQSELE 306
Query: 152 ALD 154
ALD
Sbjct: 307 ALD 309
>05_03_0582 -
15738503-15739301,15739385-15739642,15740585-15740670,
15740879-15740960,15741044-15741213,15742081-15742194,
15742984-15743082,15743171-15743249,15744604-15744710
Length = 597
Score = 30.7 bits (66), Expect = 7.9
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 37 DSIKLDDDSEREVVKMLLRLLEDKNGEVQNLAVKCLGPLVNKVKEYQVEGIVD 89
D++ D +EV+K L + L+ KN +VQ A+ L L+ ++ +V+
Sbjct: 29 DAVNSDHGQAKEVIKALKKRLQHKNSKVQFFALTLLETLMKNCGDHVHSQVVE 81
>03_01_0278 + 2136522-2137286
Length = 254
Score = 30.7 bits (66), Expect = 7.9
Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 744 LALVRSACLRCPAALTADARYAL-TPKILALAKSPL 778
L L RS L+ AA T+ A AL TP++LA A SPL
Sbjct: 26 LVLSRSRALKPLAAATSAAAAALKTPRVLAAASSPL 61
>02_05_1130 - 34319558-34319603,34320236-34320335,34320498-34320577,
34320680-34320840,34321602-34321731,34322055-34322230,
34322873-34323068,34323768-34323889,34324376-34324468,
34324672-34324740,34325259-34325423,34325771-34326061
Length = 542
Score = 30.7 bits (66), Expect = 7.9
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 3/112 (2%)
Query: 1158 DIKMLTYLMCARLAQLCPAVVLQRLESLVEPLRAT-CTMKVKANSVKQEYEKQDELKRSA 1216
DIK Y AR P V L ++ L T T+K+ S E+ ++ L++
Sbjct: 86 DIKA-AYRKLARQCSGSPFRVRTPLSLVLAVLTLTPSTLKIPMPSSVDEWHERAMLEQPT 144
Query: 1217 LRATAALMQIPEADKNPHLMDFVTQIRSLPE-LQPIFESILKDSSGAAGLDS 1267
L AA + P+ +K P D +I + E L + L D G AG+ S
Sbjct: 145 LVPVAATLYHPDVNKEPGATDKFKEISAAYEVLSDEKKRALYDQYGEAGVRS 196
>02_02_0565 + 11550071-11550909,11551603-11553133,11553205-11553537
Length = 900
Score = 30.7 bits (66), Expect = 7.9
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 93 ANMLSDTEQLRDISS-IGLKTVISELPLGSNTLAANVCKKITGKLSSAIEKQEDVSVQLE 151
AN L+D + D SS + + +++ LG TLA VC+ KL S ++Q VSV +
Sbjct: 167 ANTLADKLKAVDESSNLKVFSIVGFGGLGKTTLAMEVCR----KLESVFQRQAMVSVS-Q 221
Query: 152 ALDILADL 159
A D DL
Sbjct: 222 AFDASKDL 229
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.135 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,802,065
Number of Sequences: 37544
Number of extensions: 1137150
Number of successful extensions: 3014
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2974
Number of HSP's gapped (non-prelim): 44
length of query: 1273
length of database: 14,793,348
effective HSP length: 91
effective length of query: 1182
effective length of database: 11,376,844
effective search space: 13447429608
effective search space used: 13447429608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 66 (30.7 bits)
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