GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002649-TA|BGIBMGA002649-PA|IPR011030|Lipovitellin,
superhelical, IPR000357|HEAT, IPR013932|TATA-binding protein
interacting (TIP20)
         (1273 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    29   0.59 
AJ276428-1|CAB81934.1| 1322|Anopheles gambiae adhesive serine pr...    25   9.6  

>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 1196 KVKANSVKQEYEKQDELKRSALRATAALMQI-PEADKNPHLMDFVTQIRSLPELQ 1249
            KVK  ++K+  E  +E KR+ +  +AAL Q   EA +     D   QI S+ +L+
Sbjct: 859  KVKQQALKRSTESMEERKRTRVALSAALEQARQEASEKGERPDESEQIPSVEQLK 913


>AJ276428-1|CAB81934.1| 1322|Anopheles gambiae adhesive serine
           protease protein.
          Length = 1322

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 379 SPALIARFKEREENVKCDILSAYTALLRATRPPPALQISGTPAD 422
           +PA+ +RF +   + +  I+   T     T  PPA   S TP D
Sbjct: 685 APAISSRFGDNRPSWRPLIVPHATTTKTPTTTPPATTTSTTPRD 728


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.322    0.135    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,070,749
Number of Sequences: 2123
Number of extensions: 38266
Number of successful extensions: 103
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100
Number of HSP's gapped (non-prelim): 3
length of query: 1273
length of database: 516,269
effective HSP length: 72
effective length of query: 1201
effective length of database: 363,413
effective search space: 436459013
effective search space used: 436459013
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)