Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002647-TA|BGIBMGA002647-PA|IPR001148|Carbonic anhydrase,
eukaryotic
         (348 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    26   0.42 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    26   0.42 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   6.9  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   6.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   9.1  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   9.1  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 26.2 bits (55), Expect = 0.42
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)

Query: 173 LQQWHCHWGALNGEGSEHTVDG 194
           +QQW+ +WG L G  S  T+DG
Sbjct: 333 VQQWNSYWGIL-GFPSAPTIDG 353


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 26.2 bits (55), Expect = 0.42
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)

Query: 173 LQQWHCHWGALNGEGSEHTVDG 194
           +QQW+ +WG L G  S  T+DG
Sbjct: 333 VQQWNSYWGIL-GFPSAPTIDG 353


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 58  WRYSVNHPR 66
           W Y++NHPR
Sbjct: 334 WIYAINHPR 342


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 58  WRYSVNHPR 66
           W Y++NHPR
Sbjct: 334 WIYAINHPR 342


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 38  SPVDIVTSRVKSGASLPPLKWRYSVN 63
           S + + T   KS ASLPP+ +  +V+
Sbjct: 283 SLLTLSTQHAKSQASLPPVSYLKAVD 308


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 28  KFPQARGTRQSPVDIVTSRVKSGASLPPLKWRYSVNHPR--SIVNPGYCWRVDENG 81
           KFP   G    P D+  +  +  A LP       ++HP   +++ PG C+  D  G
Sbjct: 325 KFP-GMGHGLQPPDLAGTS-QGSAGLPSAILAMRLSHPLHGNLLPPGVCYTCDVCG 378


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,073
Number of Sequences: 429
Number of extensions: 4526
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 6
length of query: 348
length of database: 140,377
effective HSP length: 58
effective length of query: 290
effective length of database: 115,495
effective search space: 33493550
effective search space used: 33493550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)