GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002647-TA|BGIBMGA002647-PA|IPR001148|Carbonic anhydrase,
eukaryotic
         (348 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    29   1.3  
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   9.1  

>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 13/44 (29%), Positives = 21/44 (47%)

Query: 128 FRCLIIVFTKSYVKAATMSNVSHPSTPKEASFKLKGGPLNNDVY 171
           FR ++ +FT   +K + M    HP++   A  K +  P  N  Y
Sbjct: 704 FRTMLDIFTDLSLKISDMKKAGHPASEIMAMIKTQKYPATNQPY 747


>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 140 VKAATMSNVSHPSTPKEASFKLKGGPLNNDVYK 172
           ++A  +  + HP +PK+    +  GPLN   YK
Sbjct: 196 LEAREVFQLHHPPSPKQTRRVVSEGPLNGVNYK 228


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.135    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,663,652
Number of Sequences: 5004
Number of extensions: 68483
Number of successful extensions: 151
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 149
Number of HSP's gapped (non-prelim): 2
length of query: 348
length of database: 2,362,478
effective HSP length: 73
effective length of query: 275
effective length of database: 1,997,186
effective search space: 549226150
effective search space used: 549226150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)