GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002647-TA|BGIBMGA002647-PA|IPR001148|Carbonic anhydrase,
eukaryotic
         (348 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68118-4|CAD18873.1|  235|Caenorhabditis elegans Hypothetical pr...   107   2e-23
Z68118-3|CAA92190.2|  280|Caenorhabditis elegans Hypothetical pr...   107   2e-23
U41539-1|AAB52498.1|  246|Caenorhabditis elegans Carbonic anhydr...   103   2e-22
U39743-2|AAA80437.6|  310|Caenorhabditis elegans Carbonic anhydr...    98   7e-21
U12966-4|AAA20616.1|  365|Caenorhabditis elegans Carbonic anhydr...    97   2e-20
U23517-10|AAB93341.3|  337|Caenorhabditis elegans Carbonic anhyd...    88   1e-17
AF000198-1|AAB53054.1|  319|Caenorhabditis elegans Carbonic anhy...    81   1e-15
U41548-4|AAA83203.1|  322|Caenorhabditis elegans Hypothetical pr...    29   4.9  
U32305-18|AAK18852.2|  719|Caenorhabditis elegans Hypothetical p...    29   6.5  

>Z68118-4|CAD18873.1|  235|Caenorhabditis elegans Hypothetical
           protein R01E6.3b protein.
          Length = 235

 Score =  107 bits (256), Expect = 2e-23
 Identities = 58/155 (37%), Positives = 79/155 (50%), Gaps = 3/155 (1%)

Query: 161 LKGGPLNNDVYKLQQWHCHWGALNGEGSEHTVDGRSFSGELHLVHWNTSKYHSFGEAAGK 220
           L    L +  + L Q+H HWG+ + EGSEH +DG+  SGE+H V WNTS Y SF  A  K
Sbjct: 60  LTANHLPSSKFALAQFHAHWGSNSKEGSEHFLDGKQLSGEVHFVFWNTS-YESFNVALSK 118

Query: 221 PDXXXXXXXXXXXXSKHRELDKVVQLLPFVQHKGDKVTFCEPLDPAKLLPT--KTAYWTY 278
           PD              +     ++  +         +   +      LLP+  K  + TY
Sbjct: 119 PDGLAVVGVFLKEGKYNDNYHGLIDTVRKATGNATPIAMPKDFHIEHLLPSPDKREFVTY 178

Query: 279 PGSLTTPPCTESVIWLLFKEPVQVSAEQLSLMRKL 313
            GSLTTPP  E VIW LF EPV+VS  QL+++R +
Sbjct: 179 LGSLTTPPYNECVIWTLFTEPVEVSFGQLNVLRNI 213


>Z68118-3|CAA92190.2|  280|Caenorhabditis elegans Hypothetical
           protein R01E6.3a protein.
          Length = 280

 Score =  107 bits (256), Expect = 2e-23
 Identities = 58/155 (37%), Positives = 79/155 (50%), Gaps = 3/155 (1%)

Query: 161 LKGGPLNNDVYKLQQWHCHWGALNGEGSEHTVDGRSFSGELHLVHWNTSKYHSFGEAAGK 220
           L    L +  + L Q+H HWG+ + EGSEH +DG+  SGE+H V WNTS Y SF  A  K
Sbjct: 105 LTANHLPSSKFALAQFHAHWGSNSKEGSEHFLDGKQLSGEVHFVFWNTS-YESFNVALSK 163

Query: 221 PDXXXXXXXXXXXXSKHRELDKVVQLLPFVQHKGDKVTFCEPLDPAKLLPT--KTAYWTY 278
           PD              +     ++  +         +   +      LLP+  K  + TY
Sbjct: 164 PDGLAVVGVFLKEGKYNDNYHGLIDTVRKATGNATPIAMPKDFHIEHLLPSPDKREFVTY 223

Query: 279 PGSLTTPPCTESVIWLLFKEPVQVSAEQLSLMRKL 313
            GSLTTPP  E VIW LF EPV+VS  QL+++R +
Sbjct: 224 LGSLTTPPYNECVIWTLFTEPVEVSFGQLNVLRNI 258


>U41539-1|AAB52498.1|  246|Caenorhabditis elegans Carbonic anhydrase
           protein 3 protein.
          Length = 246

 Score =  103 bits (246), Expect = 2e-22
 Identities = 65/183 (35%), Positives = 93/183 (50%), Gaps = 17/183 (9%)

Query: 160 KLKGGPLNNDVYKLQQWHCHWGALNGEGSEHTVDGRSFSGELHLVHWNTSKYHSFGEAAG 219
           ++ GG L+  VY+L Q+H HWG  + EGSEHT+ G  +  ELHLVH         G+ A 
Sbjct: 75  EIYGGGLDQ-VYRLVQYHFHWGENDNEGSEHTLGGLRYPAELHLVHQGV---EDPGKLAV 130

Query: 220 KPDXXXXXXXXXXXXSKHRELDKVVQLLPFVQHKGDKVTFCEPLDPAKLLPTKTAYWTYP 279
                          ++ R L K+    P    + + V   E     KL   K ++W Y 
Sbjct: 131 VGVFLQLGKEGKALSNEERVLGKLCN--PETVTRVENVRLSE-----KLPANKRSFWRYE 183

Query: 280 GSLTTPPCTESVIWLLFKEPVQVSAEQLSLMRKLKCGEASCGVEAMELLHNYRPTLPLGN 339
           GSLTTPPC+E V W +F EPV V+ +QL L R+++       +E   +  NYRPT  L +
Sbjct: 184 GSLTTPPCSEIVTWTIFTEPVTVTHDQLELFRQVQ------DIEKRPIKKNYRPTQNLND 237

Query: 340 REL 342
           R++
Sbjct: 238 RKI 240


>U39743-2|AAA80437.6|  310|Caenorhabditis elegans Carbonic anhydrase
           protein 5 protein.
          Length = 310

 Score = 98.3 bits (234), Expect = 7e-21
 Identities = 62/186 (33%), Positives = 94/186 (50%), Gaps = 13/186 (6%)

Query: 161 LKGGPLNNDVYKLQQWHCHWGALNGEGSEHTVDGRSFSGELHLVHWNTSKYHSFGEAAGK 220
           ++GG L +  YKL Q+H HWG  +  GSEH +    +  ELHLVH       +  EA  +
Sbjct: 102 IQGGGLKHR-YKLAQFHLHWGQNDAVGSEHAMGSLHYPAELHLVHVREGL--TLKEALSR 158

Query: 221 PDXXXXXXXXXXXXSKH--RELDKVVQLLPFVQHKGDKVTFCEPLDPAKLLPTKT-AYWT 277
           PD            +     +   + + L  ++H G+K T  +      +LP  T A++ 
Sbjct: 159 PDGLAVVGVFLAKTNDPVANKFSPISERLHDLRHSGNK-TELKNFRTKYVLPLDTEAFYR 217

Query: 278 YPGSLTTPPCTESVIWLLFKEPVQVSAEQLSLMRKLKCGEASCGVEAMELLHNYRPTLPL 337
           Y GSLTTP C+E+VIW +  EP+ +S+ QL L+R+L         E ++   NYRP  PL
Sbjct: 218 YEGSLTTPDCSEAVIWTVLAEPMAISSHQLHLLRQLH------NKELVKSDKNYRPLQPL 271

Query: 338 GNRELR 343
             R ++
Sbjct: 272 NGRRIQ 277


>U12966-4|AAA20616.1|  365|Caenorhabditis elegans Carbonic anhydrase
           protein 1 protein.
          Length = 365

 Score = 97.1 bits (231), Expect = 2e-20
 Identities = 62/225 (27%), Positives = 101/225 (44%), Gaps = 6/225 (2%)

Query: 122 IYFLICFRCLI--IVFTKSYVKAATMSNVSHPSTPKEASFKLKGGPLNNDVYKLQQWHCH 179
           + ++I F   +  +     +V    M  V    + K+ S  +  GPL    Y++Q+   H
Sbjct: 132 VVYIIIFHAQVPQLQVVSEFVNTGQMVRVRIGYSSKKPSVNITSGPLYGYRYRVQRIDFH 191

Query: 180 WGALNGEGSEHTVDGRSFSGELHLVHWNTSKYHSFGEAAGKPDXXXXXXXXXXXXSK-HR 238
            G  N  GSEHT++GR F  E+ LV +NT  Y +F  A+  P              + ++
Sbjct: 192 MGRKNENGSEHTINGRRFPMEVQLVAYNTDLYPNFTSASKSPHGIAILSVLVDFGPETNQ 251

Query: 239 ELDKVVQLLPFVQHKGDKVTFCEPLDPAKLLPTKTAYWTYPGSLTTPPCTESVIWLLFKE 298
           EL K+      + +K  +V   +  +P +LLP      TY GSLT+P C E+V W++  +
Sbjct: 252 ELIKLTIATASISYKDQRVQLAD-FEPWRLLPFTRDIITYEGSLTSPGCHETVTWIILNQ 310

Query: 299 PVQVSAEQLSLMRKLKCGEASCGVEAMELLHNYRPTLPLGNRELR 343
           P+ +  E       L       G E + +  N+R      NR +R
Sbjct: 311 PIFIKKEHFEEWSHLYLSME--GAEKVPVAPNFRKIQETNNRLVR 353


>U23517-10|AAB93341.3|  337|Caenorhabditis elegans Carbonic
           anhydrase protein 2 protein.
          Length = 337

 Score = 87.8 bits (208), Expect = 1e-17
 Identities = 58/193 (30%), Positives = 88/193 (45%), Gaps = 5/193 (2%)

Query: 154 PKEASFKLKGGPLNNDVYKLQQWHCHWG-ALNGE-GSEHTVDGRSFSGELHLVHWNTSKY 211
           P   +  + GGP     YKL Q   H+G A  GE GSEHTVD   F  E+ L+ +N++ Y
Sbjct: 81  PNRPTINITGGPTMPYRYKLHQISVHFGRADEGEKGSEHTVDRVRFPAEIQLLAYNSALY 140

Query: 212 HSFGEAAGKP-DXXXXXXXXXXXXSKHRELDKVVQLLPFVQHKGDKVTFCEPLDPAKLLP 270
            +F  A   P              +   EL ++      + +KG      +   P+ LLP
Sbjct: 141 PNFSVAMTSPRGLLAVSVIVDIGKTTSVELRRLTVASQSINYKGQTTNLTD-FQPSALLP 199

Query: 271 TKTAYWTYPGSLTTPPCTESVIWLLFKEPVQVSAEQLSLMRKLKCGEASCGVEAMELLHN 330
             + Y TY GSLT P C E+V W++   P+ ++ + L +  +++  E     E   +   
Sbjct: 200 KTSHYVTYEGSLTFPGCHETVTWVILNNPIYITNDDLQIWNEMQKTETK-QPEPSYMTPA 258

Query: 331 YRPTLPLGNRELR 343
           YRP   L  R +R
Sbjct: 259 YRPLKSLNGRLVR 271


>AF000198-1|AAB53054.1|  319|Caenorhabditis elegans Carbonic
           anhydrase protein 6 protein.
          Length = 319

 Score = 81.0 bits (191), Expect = 1e-15
 Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 6/155 (3%)

Query: 166 LNNDVYKLQQWHCHWGALNGEGSEHTVDGRSFSGELHLVHWNTSKYHSFGEAAGKPD-XX 224
           L  + Y L   + HW      GSEHT+ G  ++GE+HL+H NT ++ +  +A  +P+   
Sbjct: 124 LPEEQYHLDAVNFHWATEPMNGSEHTIGGVGYAGEMHLIHRNT-RFATMADALKQPNGVI 182

Query: 225 XXXXXXXXXXSKHRELDKVVQLLPFVQHKGDKVTFCEPLDPAKLLPT--KT-AYWTYPGS 281
                       +     ++ LLP V +KG +   C   D     P   KT  +W Y GS
Sbjct: 183 AIAVFLNESHDDNAVFSPLINLLPQVIYKGSECKLCS-FDFQTFFPVAEKTKEFWMYEGS 241

Query: 282 LTTPPCTESVIWLLFKEPVQVSAEQLSLMRKLKCG 316
            TT P  E+V W++ +  + +S+ QL  +R+++ G
Sbjct: 242 ETTDPFRETVNWIVIRAALPISSHQLDKLREVRAG 276


>U41548-4|AAA83203.1|  322|Caenorhabditis elegans Hypothetical
           protein M02F4.7 protein.
          Length = 322

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 54  PPLKWRYSVNHPRSIVNPGYCWRVDENGY 82
           PP+   ++V  P S VN GYC  +  NGY
Sbjct: 104 PPIYTNFAVGEPFS-VNVGYCITIGMNGY 131


>U32305-18|AAK18852.2|  719|Caenorhabditis elegans Hypothetical
           protein B0336.3 protein.
          Length = 719

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/38 (39%), Positives = 18/38 (47%)

Query: 45  SRVKSGASLPPLKWRYSVNHPRSIVNPGYCWRVDENGY 82
           SR  SG+  PP K R S    +     GYC R D+  Y
Sbjct: 192 SRSSSGSRTPPYKSRSSRRRCKDFEERGYCIRGDQCPY 229


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.135    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,197,484
Number of Sequences: 27539
Number of extensions: 393986
Number of successful extensions: 709
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 688
Number of HSP's gapped (non-prelim): 13
length of query: 348
length of database: 12,573,161
effective HSP length: 82
effective length of query: 266
effective length of database: 10,314,963
effective search space: 2743780158
effective search space used: 2743780158
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)