GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002646-TA|BGIBMGA002646-PA|undefined
         (80 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   0.70 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   0.92 
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   1.6  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       21   2.1  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    20   3.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    19   8.6  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    19   8.6  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        19   8.6  
AJ845188-1|CAH60165.1|  517|Tribolium castaneum putative esteras...    19   8.6  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    19   8.6  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 0.70
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 27   PDDEAAEAAVREYLSLDSHGVPLTRGAFPP 56
            PD  A ++A ++  S  S GVPL   A PP
Sbjct: 1085 PDPVALKSA-QQGSSSSSEGVPLKGTAVPP 1113


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 0.92
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 40  LSLDSHGVPLTRGAFPPSLPDEPEDNWE 67
           L  DS  +PL         PDEP D++E
Sbjct: 73  LIADSRRLPLRDAVEKRPPPDEPIDDYE 100


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 1.6
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 16  GGSFNARAL-TTPDDEAAEAAVREYLSLDSHGVPLTRGAFPPS 57
           G +FN   +  +PD    +  ++  L LD  G+   +   PPS
Sbjct: 601 GYAFNVVGIGRSPDQNVKKINLKHALDLDRRGLLHRQFNLPPS 643


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 20.6 bits (41), Expect = 2.1
 Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 3/26 (11%)

Query: 55  PPSLPD---EPEDNWEVVDYVEIHRN 77
           PP LP    +PE N+EV +   +  N
Sbjct: 140 PPRLPTVYGKPEQNYEVDESASVMTN 165


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 19.8 bits (39), Expect = 3.7
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 16  GGSFNARAL-TTPDDEAAEAAVREYLSLDSHGVPLTRGAFPPS 57
           G +FN   +  +PD    +  ++  L LD  G+   +   PP+
Sbjct: 601 GYAFNVIGIGRSPDQNVKKINLKHALDLDRQGLLHRQFNLPPA 643


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 18.6 bits (36), Expect = 8.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 2   STQYHIWELPSQDIGGSFNARALT 25
           +T YHI  +   +IG S  +  +T
Sbjct: 964 ATTYHIRIVAENEIGSSEPSETVT 987


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax
          protein.
          Length = 209

 Score = 18.6 bits (36), Expect = 8.6
 Identities = 13/44 (29%), Positives = 19/44 (43%)

Query: 16 GGSFNARALTTPDDEAAEAAVREYLSLDSHGVPLTRGAFPPSLP 59
          GG+ +    T+  D A+   VR   S  S+G P+      P  P
Sbjct: 52 GGARSNADSTSHTDGASTPDVRPPSSSLSYGGPVNDDVRSPGTP 95


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 18.6 bits (36), Expect = 8.6
 Identities = 5/18 (27%), Positives = 11/18 (61%)

Query: 62 PEDNWEVVDYVEIHRNDP 79
          P+++  + D +E+   DP
Sbjct: 16 PDESINISDVIEVIETDP 33


>AJ845188-1|CAH60165.1|  517|Tribolium castaneum putative esterase
           protein.
          Length = 517

 Score = 18.6 bits (36), Expect = 8.6
 Identities = 6/17 (35%), Positives = 10/17 (58%)

Query: 59  PDEPEDNWEVVDYVEIH 75
           P+  E +W+ +   EIH
Sbjct: 467 PNVDEPDWKPISKEEIH 483


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 18.6 bits (36), Expect = 8.6
 Identities = 13/44 (29%), Positives = 19/44 (43%)

Query: 16  GGSFNARALTTPDDEAAEAAVREYLSLDSHGVPLTRGAFPPSLP 59
           GG+ +    T+  D A+   VR   S  S+G P+      P  P
Sbjct: 208 GGARSNADSTSHTDGASTPDVRPPSSSLSYGGPVNDDVRSPGTP 251


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.312    0.132    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,494
Number of Sequences: 317
Number of extensions: 704
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 80
length of database: 114,650
effective HSP length: 46
effective length of query: 34
effective length of database: 100,068
effective search space:  3402312
effective search space used:  3402312
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.1 bits)
S2: 36 (18.6 bits)