GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002646-TA|BGIBMGA002646-PA|undefined
         (80 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    27   0.24 
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    24   2.2  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    23   3.8  
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   3.8  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    23   5.1  
SPCC18B5.06 |erf1|sup45|translation release factor eRF1|Schizosa...    23   5.1  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    22   8.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    22   8.9  

>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 27.5 bits (58), Expect = 0.24
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 23  ALTTPDDEAAEAAVREYLSLDSHG----VPLTRGAFPPSLPDEPEDNWEVVDY 71
           AL  PD+     ++ + L+ ++H     V + +G  PPSLPD+    W + D+
Sbjct: 298 ALYYPDNSHGSFSIYK-LNANAHSFKLNVVIEKGIIPPSLPDDEFIPWMLSDF 349


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 23 ALTTPDDEAAEAAVREYLSLDSHGVPL 49
          AL + D E   AA+ + L  DSH V +
Sbjct: 54 ALLSSDQEIFNAAIEQLLDDDSHSVKI 80


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 7/29 (24%), Positives = 19/29 (65%)

Query: 45  HGVPLTRGAFPPSLPDEPEDNWEVVDYVE 73
           HG+ +++ ++ P+L  +  D  ++ D++E
Sbjct: 305 HGLLISKISYDPNLISDTNDEDDIADFLE 333


>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 452

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 8/71 (11%)

Query: 15  IGGSFNARALTTPDDEAAEAAVREYL-----SLDSHGVPLTRGAFPPSLPDEPEDNW--E 67
           +G SF+     T  + A+ A++ E       S  +H V L +G+ P     EPEDN+  E
Sbjct: 179 LGESFSFNQDNTFVNYASPASITEEFVEPKDSQFNHDVNLMQGSAPGYSTVEPEDNFASE 238

Query: 68  V-VDYVEIHRN 77
           +  +  E+H N
Sbjct: 239 IQTNAPEVHLN 249


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 2   STQYHIWELPSQDIGGSFNA 21
           +TQ H+++L  + I  SFNA
Sbjct: 476 ATQVHLFDLQQKKIVSSFNA 495



 Score = 22.6 bits (46), Expect = 6.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 57  SLPDEPEDNWEVVD 70
           S+P+E  D WEV D
Sbjct: 870 SVPEEEVDGWEVED 883


>SPCC18B5.06 |erf1|sup45|translation release factor
          eRF1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 6/16 (37%), Positives = 12/16 (75%)

Query: 59 PDEPEDNWEVVDYVEI 74
          P+EPED W + + +++
Sbjct: 20 PEEPEDMWHLYNILQV 35


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 8/37 (21%), Positives = 20/37 (54%)

Query: 11  PSQDIGGSFNARALTTPDDEAAEAAVREYLSLDSHGV 47
           P++D+    + ++  +P D      +RE+ S D++ +
Sbjct: 750 PTKDVNDILSEKSAFSPADYEHSIDIREHTSYDANSM 786


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 21  ARALTTPDDEAAEAAVREYLSLDSHGVPLTRGAFPPSLPDEPEDNWEVVD 70
           AR      D+AA AA+ +Y S     +P  R    P+ P +   +W+ VD
Sbjct: 821 ARKQRKAADDAARAAIEKYTS-----IPSLRDLHKPTRPLK-RVHWQRVD 864


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.132    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 437,653
Number of Sequences: 5004
Number of extensions: 15423
Number of successful extensions: 25
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 9
length of query: 80
length of database: 2,362,478
effective HSP length: 59
effective length of query: 21
effective length of database: 2,067,242
effective search space: 43412082
effective search space used: 43412082
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 45 (22.2 bits)