Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002646-TA|BGIBMGA002646-PA|undefined
(80 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1258 - 25670092-25670152,25671124-25671327,25671400-256716... 30 0.20
10_07_0026 + 11981216-11981279,11981667-11981730,11981839-11982073 28 1.1
11_06_0720 - 26617665-26617781,26617851-26617924,26618218-266183... 27 1.4
08_02_0707 - 20212190-20214592 27 1.4
05_03_0079 + 8212648-8212724,8212844-8212993,8213211-8213351,821... 27 1.4
01_01_0200 + 1737965-1738492 27 1.9
11_06_0413 - 23242228-23242517,23242732-23243180,23243338-23244458 27 2.5
10_08_1010 + 22230329-22230658,22231033-22231298,22231411-222315... 26 3.3
06_03_1479 + 30428488-30428502,30428619-30428715,30429627-304299... 26 4.4
05_06_0166 + 26093618-26095381,26095820-26096039,26096345-260966... 26 4.4
03_03_0236 - 15696495-15696977,15697290-15697339,15699867-15699906 26 4.4
03_02_0085 - 5539188-5539388,5539576-5539714,5540108-5540279,554... 26 4.4
04_01_0021 + 311914-312399,314218-314310,314391-314672,314754-31... 25 5.8
02_05_0106 - 25877997-25878677,25878951-25879222,25879317-25879476 25 5.8
09_01_0016 - 376742-376883,377973-378964 25 7.7
08_01_0410 + 3661304-3661383,3661494-3661673,3661757-3661870,366... 25 7.7
02_02_0001 - 5977498-5979003 25 7.7
01_01_0246 + 2020415-2021167 25 7.7
>08_02_1258 -
25670092-25670152,25671124-25671327,25671400-25671611,
25671701-25671749,25671833-25672612,25672696-25672767,
25672907-25672954,25673053-25673127,25673238-25673312,
25673614-25673668,25673931-25674016,25674759-25674988
Length = 648
Score = 30.3 bits (65), Expect = 0.20
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 43 DSHGVPLTRGAFPPSLPDEP 62
DS+G P+ GAFPP +P P
Sbjct: 533 DSYGDPVMHGAFPPDIPAPP 552
>10_07_0026 +
11981216-11981279,11981667-11981730,11981839-11982073
Length = 120
Score = 27.9 bits (59), Expect = 1.1
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 51 RGAFPPSLPDEPEDNWEVVDYV 72
R F P PD P+ +WE D V
Sbjct: 59 RNGFRPPTPDRPDPDWEAPDLV 80
>11_06_0720 -
26617665-26617781,26617851-26617924,26618218-26618331,
26619375-26619399,26619564-26619620,26620273-26622888
Length = 1000
Score = 27.5 bits (58), Expect = 1.4
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 8 WELPSQDIGGSFNARALTTPDDEAAEAAVREYLSLDSHGVPLTRGAF 54
WE+P +++ S+ A + + E A+R Y + GVP AF
Sbjct: 103 WEMPERNVV-SWTALMVALSSNGYLEEALRAYRQMRRDGVPCNANAF 148
>08_02_0707 - 20212190-20214592
Length = 800
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 5 YHIWELPSQDIGGSFNARALTTPDDEAAEAAVREYLS 41
+H+W L + DI G+F+ T EA ++++RE S
Sbjct: 748 FHVWNLTNTDIVGTFHLHITT----EADKSSIREKAS 780
>05_03_0079 +
8212648-8212724,8212844-8212993,8213211-8213351,
8213658-8213820,8213901-8214094,8214174-8214369,
8214462-8214539,8214933-8215162,8215574-8215688,
8215878-8215952,8216032-8216172,8216309-8216512,
8216586-8216747,8216787-8216794,8217099-8217223,
8217316-8217438,8218177-8218307,8218527-8218658
Length = 814
Score = 27.5 bits (58), Expect = 1.4
Identities = 11/49 (22%), Positives = 24/49 (48%)
Query: 7 IWELPSQDIGGSFNARALTTPDDEAAEAAVREYLSLDSHGVPLTRGAFP 55
IW + Q+ G++++ A + + +A + + D H + + GA P
Sbjct: 741 IWYVEQQNAQGAYSSTAEVKEEVKCIKAIIERLIQRDGHLIVIDEGAAP 789
>01_01_0200 + 1737965-1738492
Length = 175
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 7 IWELPSQDIGGSFNARALTTPDDEAAEAAVREY 39
IW + GG + ALT+P+ AA AA E+
Sbjct: 116 IWGFEDEIGGGGYAGFALTSPEAVAAAAAAAEW 148
>11_06_0413 - 23242228-23242517,23242732-23243180,23243338-23244458
Length = 619
Score = 26.6 bits (56), Expect = 2.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 34 AAVREYLSLDSHGVPLTRGAFPPSLPDEPEDNW 66
A +R S+D G PL+R P + D E W
Sbjct: 438 AVIRALRSMDLEGHPLSRDLPSPRVSDRAESYW 470
>10_08_1010 +
22230329-22230658,22231033-22231298,22231411-22231528,
22231842-22232050,22232297-22232750
Length = 458
Score = 26.2 bits (55), Expect = 3.3
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 10 LPSQDIGGSFNARALTTPDDEAAEAAVREYLSLDSHGVPLTRGAFPPSLPDEPEDNWEVV 69
LP +GG F DDE E A LD+ V L A PPS P + W+V+
Sbjct: 50 LPRALLGGGFQDADAAESDDEEEEDAHGVLRPLDADDVNLDLHA-PPSGP----ERWDVL 104
>06_03_1479 +
30428488-30428502,30428619-30428715,30429627-30429904,
30430256-30431032,30431254-30431343,30431538-30431605,
30431696-30431789,30431902-30431961
Length = 492
Score = 25.8 bits (54), Expect = 4.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 53 AFPPSLPDEPEDNWEVVDYVEIH 75
AF PS ++NW +VD+ H
Sbjct: 157 AFKPSPKTNMQENWRIVDFFSHH 179
>05_06_0166 +
26093618-26095381,26095820-26096039,26096345-26096674,
26097481-26098029,26098366-26098426,26099737-26099824,
26100240-26100299
Length = 1023
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 10 LPSQDIGGSFNARALTTPDDEAAEAAVREYLSL--DSHGVP 48
LPS SFN LT P+ + + ++ ++ HG+P
Sbjct: 709 LPSSSTSASFNQGLLTCPEGDIGRSTAIDHTNIYAGPHGLP 749
>03_03_0236 -
15696495-15696977,15697290-15697339,15699867-15699906
Length = 190
Score = 25.8 bits (54), Expect = 4.4
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 19 FNARALTTPDDE--AAEAAVREYLSLDSHGVPLTRGAFPPS 57
F+++ PDD+ +E +R YL SHG + GA PS
Sbjct: 32 FSSQGRPLPDDDGITSEMQIRRYLL--SHGNGVVEGAVSPS 70
>03_02_0085 -
5539188-5539388,5539576-5539714,5540108-5540279,
5541119-5541165,5541450-5541527,5542113-5542177,
5543108-5543155,5543393-5543473,5543586-5543783
Length = 342
Score = 25.8 bits (54), Expect = 4.4
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 18 SFNARALTTPDDEAAEAAVREYLSLDSHGVPLTRGAFPPSLPD 60
+F+ R L PD EA +R LSL S P T + PP P+
Sbjct: 22 AFSRRLLIAPDAAPDEARLRPLLSL-SLSPPPTPPSPPPPPPE 63
>04_01_0021 +
311914-312399,314218-314310,314391-314672,314754-314826,
315273-315405,315476-315629,315763-315843,316174-316296,
316629-316787,316862-316996,317159-317254,317416-317910,
318651-318722,319496-319537
Length = 807
Score = 25.4 bits (53), Expect = 5.8
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 15 IGGSFNARALTTPDDEAAEAAVREYLSLDSHGVPLTRGAFPPSLPDE 61
I G N R + ++ + + EYL +P++ GA ++ DE
Sbjct: 593 INGVSNCRFVCGKAEDVMGSLLTEYLGSPQQDIPVSEGAVSGTVKDE 639
>02_05_0106 - 25877997-25878677,25878951-25879222,25879317-25879476
Length = 370
Score = 25.4 bits (53), Expect = 5.8
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 17 GSFNARALTTPDDEAAEAAVRE 38
GS ++ ALTT DDEA+ +A ++
Sbjct: 265 GSSSSTALTTHDDEASGSAAQQ 286
>09_01_0016 - 376742-376883,377973-378964
Length = 377
Score = 25.0 bits (52), Expect = 7.7
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 42 LDSHGVPLTRGAF-----PPSLPDEPEDNWEVV 69
LDSHG P + F PP P P+ N + V
Sbjct: 45 LDSHGAPTKKAPFVAPPPPPPPPPPPQQNGKEV 77
>08_01_0410 +
3661304-3661383,3661494-3661673,3661757-3661870,
3661975-3662133,3662193-3662243,3662838-3663018,
3663102-3663228,3663322-3663431,3663529-3663667,
3663767-3663876,3664002-3664071,3664247-3664320,
3664458-3664553,3664682-3664777,3665041-3665168,
3665422-3665656,3665743-3665910,3666274-3666381,
3666468-3666617,3666905-3667015,3667118-3667297,
3667427-3667555,3667819-3667914,3668108-3668293,
3668431-3668603,3668720-3668921
Length = 1150
Score = 25.0 bits (52), Expect = 7.7
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 2 STQYHIWELPSQDIGGSFNARALTTPDDEAAEAAVREYLSLDSHGVPL 49
S + W+L DIG S + RAL PD A + V L ++GV L
Sbjct: 761 SEKVKTWKLA--DIGDSGHLRALRMPDTSATSSKVVRLL-YTNNGVAL 805
>02_02_0001 - 5977498-5979003
Length = 501
Score = 25.0 bits (52), Expect = 7.7
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 31 AAEAAVREYLSLDSHGVPLTRGAFPPSLPDEPEDNWEVVDY 71
AA+ AVR L L+ VP A LP E+ ++ DY
Sbjct: 64 AADLAVRAELPLEIVEVPFPPSAADAGLPPGVENVDQITDY 104
>01_01_0246 + 2020415-2021167
Length = 250
Score = 25.0 bits (52), Expect = 7.7
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 27 PDDEAAEAAVREYLSLDSHGVPLTRGAFPPSLPDEPE 63
P D A A+ Y+ L G +T G PP +P PE
Sbjct: 199 PPDGKANAS--RYVELVRGGFLITWGNLPPPVPPPPE 233
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.132 0.407
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,991,396
Number of Sequences: 37544
Number of extensions: 111476
Number of successful extensions: 224
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 213
Number of HSP's gapped (non-prelim): 19
length of query: 80
length of database: 14,793,348
effective HSP length: 59
effective length of query: 21
effective length of database: 12,578,252
effective search space: 264143292
effective search space used: 264143292
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 52 (25.0 bits)
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