GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002646-TA|BGIBMGA002646-PA|undefined
         (80 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82086-1|CAB04993.1|  738|Caenorhabditis elegans Hypothetical pr...    29   0.51 
U23449-6|AAC24300.2|  937|Caenorhabditis elegans Hypothetical pr...    28   0.90 
AF068716-6|AAC17744.1|  257|Caenorhabditis elegans Hypothetical ...    27   2.1  
Z99276-2|CAB16482.1|  388|Caenorhabditis elegans Hypothetical pr...    26   3.6  
AL023843-2|CAA19523.1|  388|Caenorhabditis elegans Hypothetical ...    26   3.6  
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr...    25   6.3  
AF043699-1|AAB97563.2|  202|Caenorhabditis elegans Hypothetical ...    25   6.3  
AF040661-16|AAG24218.1|  318|Caenorhabditis elegans Hypothetical...    25   6.3  
Z81058-3|CAB62800.1|  345|Caenorhabditis elegans Hypothetical pr...    25   8.4  
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    25   8.4  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    25   8.4  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    25   8.4  
AL117202-15|CAC42376.1|  627|Caenorhabditis elegans Hypothetical...    25   8.4  
AL117202-14|CAB57894.2|  766|Caenorhabditis elegans Hypothetical...    25   8.4  

>Z82086-1|CAB04993.1|  738|Caenorhabditis elegans Hypothetical
           protein ZK228.1 protein.
          Length = 738

 Score = 28.7 bits (61), Expect = 0.51
 Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 7/74 (9%)

Query: 3   TQYHIWELPSQDIGGSFNARALTTPDDEAAEAAVREYLSLDSHGVPLTRGAFPPSLPDEP 62
           T+  IWE P  DIG   NA  +  P D     AVR  +    H   L     PP   ++ 
Sbjct: 583 TKARIWESPLHDIGQLRNALEIPVPTD---NQAVRLRIGWMIH---LLTCQLPPETVNQ- 635

Query: 63  EDNWEVVDYVEIHR 76
               EV+DY++I R
Sbjct: 636 GSYVEVLDYLKILR 649


>U23449-6|AAC24300.2|  937|Caenorhabditis elegans Hypothetical
           protein K06A1.6 protein.
          Length = 937

 Score = 27.9 bits (59), Expect = 0.90
 Identities = 10/16 (62%), Positives = 12/16 (75%)

Query: 57  SLPDEPEDNWEVVDYV 72
           SLP EP+ NW  +DYV
Sbjct: 833 SLPYEPDKNWRFLDYV 848


>AF068716-6|AAC17744.1|  257|Caenorhabditis elegans Hypothetical
          protein F26D11.9 protein.
          Length = 257

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 27 PDDEAAEAAVREYLSLDSHGVPLTRGAFPPSLPDEPEDNWEVVD 70
          PD+ + E       + DS G P   GA  P++     D+W+VV+
Sbjct: 30 PDEPSCEDEDDNDNNYDSQGRPRRVGASRPTIRKVHIDDWDVVE 73


>Z99276-2|CAB16482.1|  388|Caenorhabditis elegans Hypothetical
           protein Y52D3.1a protein.
          Length = 388

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 36  VREYLSLDSHGVPLTRGAFPPSLPDEPEDNWEVV-DYVEI 74
           VR+ L+LD     L+     P +P EP+  +E+V DY  I
Sbjct: 348 VRQELNLDYAHFDLSLWEQEPLIPMEPDQKYEIVFDYSPI 387


>AL023843-2|CAA19523.1|  388|Caenorhabditis elegans Hypothetical
           protein Y52D3.1a protein.
          Length = 388

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 36  VREYLSLDSHGVPLTRGAFPPSLPDEPEDNWEVV-DYVEI 74
           VR+ L+LD     L+     P +P EP+  +E+V DY  I
Sbjct: 348 VRQELNLDYAHFDLSLWEQEPLIPMEPDQKYEIVFDYSPI 387


>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
            F46C3.3 protein.
          Length = 2557

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 27   PDDEAAEAAVREYLSLDSHGVPLTRGAFPPSLPDEPEDN 65
            PD+E+ E+ VREY     +   L R   P   P   EDN
Sbjct: 1109 PDEESDESLVREYNEEAGYAYTLPRKNKP--APQAVEDN 1145


>AF043699-1|AAB97563.2|  202|Caenorhabditis elegans Hypothetical
           protein K02F2.5 protein.
          Length = 202

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 38  EYLSLDSHGVPLTRGAFPPSLPDEPEDNWEVV 69
           EY+  D   VP+        LP++ E+N EV+
Sbjct: 129 EYMPRDRRSVPVFEAYDENDLPEQFEENQEVI 160


>AF040661-16|AAG24218.1|  318|Caenorhabditis elegans Hypothetical
           protein W10G11.11 protein.
          Length = 318

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 14/35 (40%), Positives = 17/35 (48%)

Query: 24  LTTPDDEAAEAAVREYLSLDSHGVPLTRGAFPPSL 58
           LT PDD + +  V     L     PL   +FPPSL
Sbjct: 240 LTRPDDSSNDNWVWTLPDLKIDSSPLPPWSFPPSL 274


>Z81058-3|CAB62800.1|  345|Caenorhabditis elegans Hypothetical
          protein F11E6.3 protein.
          Length = 345

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 9  ELPSQDIGGSFNARALTTPDDEAAEAAVRE 38
          E P+QD G     +A  +  DEAA  AV E
Sbjct: 66 EAPAQDAGYRSKRQAQNSYGDEAAAPAVEE 95


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 24   LTTPDDEAAEAAVREYLSLDSHGVPLTRGAFPPSLPDEPEDNWEVV 69
            L T D  A      E +  DS+G+PL +   P  L  +   N+ VV
Sbjct: 5919 LPTDDSGAVIGPDGEVIPTDSNGIPLNKDGLP--LSTDASGNYIVV 5962


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
            protein K07E12.1a protein.
          Length = 13100

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 24   LTTPDDEAAEAAVREYLSLDSHGVPLTRGAFPPSLPDEPEDNWEVV 69
            L T D  A      E +  DS+G+PL +   P  L  +   N+ VV
Sbjct: 5964 LPTDDSGAVIGPDGEVIPTDSNGIPLNKDGLP--LSTDASGNYIVV 6007


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
            protein.
          Length = 13100

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 24   LTTPDDEAAEAAVREYLSLDSHGVPLTRGAFPPSLPDEPEDNWEVV 69
            L T D  A      E +  DS+G+PL +   P  L  +   N+ VV
Sbjct: 5964 LPTDDSGAVIGPDGEVIPTDSNGIPLNKDGLP--LSTDASGNYIVV 6007


>AL117202-15|CAC42376.1|  627|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17b protein.
          Length = 627

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 30  EAAEAAVREYLSLDSHGVPLTRGAFPPSLPDEPEDN 65
           E  EA  +++ SL+       RGA P S+  + ED+
Sbjct: 133 EQLEALAKQHSSLERAASKCARGAAPVSVYSDQEDD 168


>AL117202-14|CAB57894.2|  766|Caenorhabditis elegans Hypothetical
           protein Y47D3A.17a protein.
          Length = 766

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 30  EAAEAAVREYLSLDSHGVPLTRGAFPPSLPDEPEDN 65
           E  EA  +++ SL+       RGA P S+  + ED+
Sbjct: 272 EQLEALAKQHSSLERAASKCARGAAPVSVYSDQEDD 307


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.312    0.132    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,339,483
Number of Sequences: 27539
Number of extensions: 82960
Number of successful extensions: 156
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 141
Number of HSP's gapped (non-prelim): 19
length of query: 80
length of database: 12,573,161
effective HSP length: 60
effective length of query: 20
effective length of database: 10,920,821
effective search space: 218416420
effective search space used: 218416420
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 51 (24.6 bits)