Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002644-TA|BGIBMGA002644-PA|IPR000308|14-3-3 protein
         (313 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   3.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   4.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.0  

>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
          determiner protein.
          Length = 418

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 37 ELSNEER--NLLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVK 87
          +L NE+   +L S   +  +  RR +W V    EQ+ E  +RK  +  E  +K
Sbjct: 17 QLRNEDNKIDLRSRTKEERLQYRREAWLVQQEREQEYEKLKRKMILEYELYIK 69


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/45 (20%), Positives = 23/45 (51%)

Query: 145 EDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDK 189
           ED ++  +D F      ++P   +   + +NF + + +++N  +K
Sbjct: 25  EDEERLVRDLFRGYNKLIRPVQNMTEKVHVNFGLAFVQLINVNEK 69


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 13/63 (20%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 68  EQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDY 127
           E++T  +E+  +M K Y   ++KE +++  ++      + +  A   ++   + K K D+
Sbjct: 441 EKRTIENEQLNRMYKSYPNYIDKETKDMNLEISTRPKSNTVENACVLKNTEIF-KDKSDW 499

Query: 128 YRY 130
           + Y
Sbjct: 500 FDY 502


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.129    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,651
Number of Sequences: 429
Number of extensions: 3183
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 3
length of query: 313
length of database: 140,377
effective HSP length: 58
effective length of query: 255
effective length of database: 115,495
effective search space: 29451225
effective search space used: 29451225
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 44 (21.8 bits)