GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002644-TA|BGIBMGA002644-PA|IPR000308|14-3-3 protein
         (313 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    24   1.3  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    24   1.3  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/27 (29%), Positives = 17/27 (62%)

Query: 163 QPTHPIRLGLALNFSVFYYEILNSPDK 189
           +P HP+R+   ++FS   Y+ + + D+
Sbjct: 375 EPVHPVRVNTIISFSGERYDFVINADQ 401



 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/22 (31%), Positives = 14/22 (63%)

Query: 229 QPSHPIRLGLALNFSVFYYEII 250
           +P HP+R+   ++FS   Y+ +
Sbjct: 375 EPVHPVRVNTIISFSGERYDFV 396


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/27 (29%), Positives = 17/27 (62%)

Query: 163 QPTHPIRLGLALNFSVFYYEILNSPDK 189
           +P HP+R+   ++FS   Y+ + + D+
Sbjct: 375 EPVHPVRVNTIISFSGERYDFVINADQ 401



 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/22 (31%), Positives = 14/22 (63%)

Query: 229 QPSHPIRLGLALNFSVFYYEII 250
           +P HP+R+   ++FS   Y+ +
Sbjct: 375 EPVHPVRVNTIISFSGERYDFV 396


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.129    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,888
Number of Sequences: 317
Number of extensions: 2613
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 313
length of database: 114,650
effective HSP length: 57
effective length of query: 256
effective length of database: 96,581
effective search space: 24724736
effective search space used: 24724736
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 43 (21.4 bits)