GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002643-TA|BGIBMGA002643-PA|IPR013209|LNS2,
Lipin/Ned1/Smp2, IPR007651|Lipin, N-terminal conserved region
         (883 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    25   3.0  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    25   3.0  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    24   3.9  

>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 15/49 (30%), Positives = 17/49 (34%), Gaps = 2/49 (4%)

Query: 346 DLYFPKYHAERHRGSSVVQHARAAPT--EEEYESGNGPSLPQSPASLEP 392
           D   PKYH + H           AP        SG+ P    S AS  P
Sbjct: 8   DSMLPKYHQQFHHQQLFQSATTEAPAAYSSSSPSGSSPQHSSSSASTSP 56


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 15/49 (30%), Positives = 17/49 (34%), Gaps = 2/49 (4%)

Query: 346 DLYFPKYHAERHRGSSVVQHARAAPT--EEEYESGNGPSLPQSPASLEP 392
           D   PKYH + H           AP        SG+ P    S AS  P
Sbjct: 8   DSMLPKYHQQFHHQQLFQSATTEAPAAYSSSSPSGSSPQHSSSSASTSP 56


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 524 DIPTKSSPPQSEAVDTVALQETPAEESTVETIEE 557
           ++PTKSSP  S     V+L  +P  E  + T E+
Sbjct: 222 EVPTKSSPRSSPVQSDVSL--SPVHEPLLITTEK 253


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.130    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,830
Number of Sequences: 317
Number of extensions: 7403
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 3
length of query: 883
length of database: 114,650
effective HSP length: 63
effective length of query: 820
effective length of database: 94,679
effective search space: 77636780
effective search space used: 77636780
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 47 (23.0 bits)