Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002643-TA|BGIBMGA002643-PA|IPR013209|LNS2,
Lipin/Ned1/Smp2, IPR007651|Lipin, N-terminal conserved region
(883 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual 267 5e-72
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa... 31 0.92
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 29 2.1
SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3 |Sc... 28 4.9
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 4.9
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 28 6.5
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 27 8.6
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 27 8.6
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 27 8.6
>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 656
Score = 267 bits (654), Expect = 5e-72
Identities = 129/255 (50%), Positives = 174/255 (68%), Gaps = 10/255 (3%)
Query: 621 FRKTLRLSSEQIRNLNLREGMNEMVFSVTTAYQGTTRCKCNVFRWRYDDKVVISDIDGTI 680
+ KTLRL+S+Q+R+LNL+ G NE+ F V G C N+F W+++D VVISDIDGTI
Sbjct: 332 YAKTLRLTSDQLRSLNLKPGKNELSFGVNG---GKAICTANLFFWKHNDPVVISDIDGTI 388
Query: 681 TKSDVLGHIFPMVGKDWAQSGVAQLFTKIKNNGYQLLYLSARAIGQAKVTREYLRSIRQG 740
TKSD LGH+F ++GKDW +GVA+L+T I NNGY+++YL++R++GQA TR YLR+I Q
Sbjct: 389 TKSDALGHMFTLIGKDWTHAGVAKLYTDITNNGYKIMYLTSRSVGQADSTRHYLRNIEQN 448
Query: 741 EVCLPDGPLLLNPTSLLRAFHREVIEKKPEEFKIQCLADIKALF--PQGSNPFYAGYGNR 798
LPDGP++L+P + A HREVI +KPE FK+ CL D+ +F P PFYAG+GNR
Sbjct: 449 GYSLPDGPVILSPDRTMAALHREVILRKPEVFKMACLRDLCNIFALPVPRTPFYAGFGNR 508
Query: 799 VNDVCAYQAVGIPIVRIFTINYKGELKHELTQT--FQSTYSHMSVLVDQVFPPAQCEPSD 856
+ D +Y V +P RIFTIN GE+ EL Q +S+Y +M+ LVD FPP + D
Sbjct: 509 ITDAISYNHVRVPPTRIFTINSAGEVHIELLQRSGHRSSYVYMNELVDHFFPPIEVSTRD 568
Query: 857 E---FSQTVYWRDPL 868
E F+ +WR PL
Sbjct: 569 EVSSFTDVNFWRSPL 583
Score = 28.3 bits (60), Expect = 4.9
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 1 MKLGESGEAFFVEEVGEDEAECSAHLATSPIPAARFEELYEPRRRNSLSAVEP 53
MKLG+ GEAFFV E L TSPI P++ S++ EP
Sbjct: 74 MKLGDGGEAFFVFAT---ENAVPRELQTSPI----VSPTTSPKQTPSINVTEP 119
>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 30.7 bits (66), Expect = 0.92
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 64 RRYTADGQTMQKPDLTKIKKNTTKDEKPSKDNEA 97
RR +G+ + K+KKNT K+E+ KD+E+
Sbjct: 120 RRAANEGEHNESVPAKKVKKNTVKEEEIEKDDES 153
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 78 LTKIKKNTTKDEKPSKDNEALFEMEDLDEGTDWTDGKTPKT 118
+T+IK ++ KDE P K E+ +E + T + K +T
Sbjct: 1 MTEIKDSSVKDENPGKQEESSIAVESREMSTATNNSKNIET 41
>SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 297
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 532 PQSEAVDTVALQETPAEESTVETIEETQN--IVNVDDVFESQPVEVEENILTMSENA 586
P+ +D ++ P E V+ + Q V V D+ E QP ++ N L M ENA
Sbjct: 226 PRRFYMDVESVGSIPPNEIMVQGLRILQEKLAVLVRDLDEEQPTQLSANELNMEENA 282
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.3 bits (60), Expect = 4.9
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 352 YHAERH--RGSSV-VQHARAAPTEEEYESGNGPSLPQSPASLEPPVMDS-DDDDKILAK 406
YH E + GS + V+ + TE+ ES +G + SP+ L P V D+ ++ K+L K
Sbjct: 672 YHVEPNILSGSGIPVRVHTPSKTEDLDESFSGSEISSSPSPLLPDVSDTVEEQQKLLLK 730
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 27.9 bits (59), Expect = 6.5
Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 8/109 (7%)
Query: 44 RRNSLSAVEPDHGQASDYTKRRYTADGQTMQKPD----LTKIKKNTTKDEKPSKDNE--- 96
++N ++ ASD + + +Q+P+ LT KN+T E S +E
Sbjct: 215 QQNKYESLHAKQISASDLSLHQEFVSASIVQQPELNSLLTSQSKNSTPSESDSSSSESSS 274
Query: 97 ALFEMEDLDEGTDWTDGKTPKTFAATQLGEAESEANQAVQ-KISVHNDF 144
++ + DL +D + G A + S N +V ++ N+F
Sbjct: 275 SVSDSSDLSSTSDSSSGDESSDTARQSSSDTISSNNVSVSVSLNTANEF 323
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Query: 69 DGQTMQKPDLTKIKKNTTKDEKPSKDNEALFEMEDLDE----GTDWTDGKTPKTFAATQL 124
D + KP +K K+ K +K + +E DL+E D D + P +L
Sbjct: 27 DEAAITKPPASKKKRKNRKKKKNNGPSEQFVGNNDLEEQRSGSIDSKDKEKPLDEKVKEL 86
Query: 125 GEAESEANQAVQKISVHND 143
A + V++I + D
Sbjct: 87 ENANKTLSDLVRRIQIQRD 105
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 528 KSSPPQSEAVDTV---ALQETPAEESTVETIEETQNIVNVDDVFESQPVEVE 576
KS+ P+ + DTV AL PA++ TI + ++ D+F +QP+ E
Sbjct: 354 KSTSPELKVFDTVMPVALSPKPAQKPPSPTIHTKAALADILDIF-NQPLRSE 404
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/60 (21%), Positives = 28/60 (46%)
Query: 519 TSLSDDIPTKSSPPQSEAVDTVALQETPAEESTVETIEETQNIVNVDDVFESQPVEVEEN 578
+S ++ PT S +++ + QE P E+ ++ EE N+ + ++ VE +
Sbjct: 351 SSKPNEAPTSSENIKADQPENSTKQENPEEDMQIKDAEEHSNLESTPAAQQTSEVEANNH 410
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.130 0.383
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,731,777
Number of Sequences: 5004
Number of extensions: 153427
Number of successful extensions: 390
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 380
Number of HSP's gapped (non-prelim): 12
length of query: 883
length of database: 2,362,478
effective HSP length: 79
effective length of query: 804
effective length of database: 1,967,162
effective search space: 1581598248
effective search space used: 1581598248
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 58 (27.5 bits)
- SilkBase 1999-2023 -