Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002641-TA|BGIBMGA002641-PA|IPR007245|Gpi16 subunit, GPI
transamidase component
         (507 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      25   1.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   2.6  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   7.9  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   7.9  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   7.9  

>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 256 ALYTIKPENKMTTIGAKYISKKDLVLMKLPPLY 288
           A + +  +  +  +    I + D  LMKLPP+Y
Sbjct: 129 ARFNVNEQMYLYALSVAVIHRPDTKLMKLPPMY 161


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 12/54 (22%), Positives = 22/54 (40%)

Query: 352  PGRSRQKPYHLELLLRLPPKSATKITIDFEFVFLKWQEYPPDANHGFYVGSAII 405
            P    ++ +  E +   PP   T  T+  + + + W   P  A +G   G  +I
Sbjct: 1067 PMSEERRQHTAEGVPEQPPHDTTCTTLTSQTIRISWMSPPLSAANGVITGYKVI 1120


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 325 WWLPIQLSSLRINGEASSEMVLARHYSPGRSRQKPY 360
           W   I ++ LR NG  SS  V+++    G    +PY
Sbjct: 72  WHDKIFVTMLRYNGVPSSLNVISKKVGDGGPLLQPY 107


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 325 WWLPIQLSSLRINGEASSEMVLARHYSPGRSRQKPY 360
           W   I ++ LR NG  SS  V+++    G    +PY
Sbjct: 72  WHDKIFVTMLRYNGVPSSLNVISKKVGDGGPLLQPY 107


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 325 WWLPIQLSSLRINGEASSEMVLARHYSPGRSRQKPY 360
           W   I ++ LR NG  SS  V+++    G    +PY
Sbjct: 72  WHDKIFVTMLRYNGVPSSLNVISKKVGDGGPLLQPY 107


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,921
Number of Sequences: 429
Number of extensions: 6171
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 5
length of query: 507
length of database: 140,377
effective HSP length: 61
effective length of query: 446
effective length of database: 114,208
effective search space: 50936768
effective search space used: 50936768
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)