Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002641-TA|BGIBMGA002641-PA|IPR007245|Gpi16 subunit, GPI
transamidase component
(507 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual 110 5e-25
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 31 0.50
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po... 30 0.66
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ... 29 1.2
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 29 2.0
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 28 2.7
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 28 3.5
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 8.1
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 27 8.1
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 8.1
>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 110 bits (264), Expect = 5e-25
Identities = 60/167 (35%), Positives = 95/167 (56%), Gaps = 12/167 (7%)
Query: 3 VLAEHTY-LAPRSLVEVLTRFQVDELHFTLTEGQWRHNHWGYP----VLDAAPGAELYAW 57
V +E ++ L P S+ V+ QV ELH T G+W + +W G E++A+
Sbjct: 61 VFSESSFSLFPLSIARVMDECQVSELHIRATRGRWDYENWKESPDNGFYSGGLGFEVWAF 120
Query: 58 FSSDVENVDTQWKKLSSTLAGLFCASLNFIEDFNTITPQMALQPTGAIPQNPNITSQLRY 117
++D W KL++ L+GL CASLN+I+ NT PQ++ + + N +
Sbjct: 121 MANDPSM--KYWLKLTNQLSGLLCASLNYIDSSNTYQPQLSYPGSFSFSNNTQY-----F 173
Query: 118 ASLPREIVCTENLTPWKKLLPCESSRGLSALLNSRMIHNTNYHSIGV 164
ASLP+E VCTENL+P KLLPC+ G+++LL+S + +T++HS +
Sbjct: 174 ASLPQEDVCTENLSPLFKLLPCKRKAGIASLLDSHLFFDTDWHSFSI 220
Score = 87.0 bits (206), Expect = 5e-18
Identities = 60/192 (31%), Positives = 94/192 (48%), Gaps = 26/192 (13%)
Query: 297 GKEFGGIVTELTNTFWSSIDVVVLQNAPWWLPIQLSSLRI--NGEA--SSEMVLARHYSP 352
G +G + + + N S +V + PW++ + L +L I NG + + + +Y P
Sbjct: 349 GNHWGSLSSTIYNPSSSPRTIVYFEKFPWFVRVYLHTLTITLNGTRINTKDFIEKLYYQP 408
Query: 353 GRSRQKPYHLELLLRLPPKSATKITIDFEFVFLKWQEYPPDANHGFYVGSAIITANLPTA 412
R R+ +E+ +PP + + + E L+ EYPPDAN G+ NLP
Sbjct: 409 LRDRKAGTMMEIQFSIPPHTNLIVHFNVEKTPLRLDEYPPDANRGY---------NLP-- 457
Query: 413 RNYTSLPGTASLFESSINASKPWYPAVFRTNGVMVSLPTPDFSMPYNVICLACTVVALAF 472
P S+F+ N +K RT +++ +PTPDFSMPYNVI TV+AL F
Sbjct: 458 ------PAIISVFDE--NNTK---LCSLRTAALLMFIPTPDFSMPYNVIIFTSTVIALTF 506
Query: 473 GPLHNICTKELV 484
G + N+ T+ V
Sbjct: 507 GGIFNLLTRRFV 518
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 30.7 bits (66), Expect = 0.50
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 64 NVDTQWKKLSSTLAGLFCASLNFIEDFNTITPQMALQPTGAIPQNPNITSQLRYASLPRE 123
NV + K ++ AG+ C +NF ED +A++ P I QL + E
Sbjct: 48 NVYVRMKTRAANEAGISCEHVNFPEDITEYDLLLAIKGFNEDPTVHGIIVQLPLPAHINE 107
Query: 124 IVCTENLTPWKKLLP-CESSRG 144
+ TE + P K + CE++ G
Sbjct: 108 QIITEAVAPEKDVDGFCETNLG 129
>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 586
Score = 30.3 bits (65), Expect = 0.66
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 336 INGEASSEMVLARHYSPGRSRQKPYHLELLLRLPPKSATKITIDFEFVFLKWQE 389
+NG + + ++RH + GR+ + HL +L + K +T F F ++Q+
Sbjct: 493 LNGLTDNNVEVSRHNNIGRTAESVTHLTDMLLITTKDVAFVTDRVNFEFQRYQD 546
>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
Str2 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 29.5 bits (63), Expect = 1.2
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 388 QEYPPDANHGFYVGSAIITANLPTARNYTSLPGTASLFESSINASKPWYPAVFRTNGVMV 447
Q + P+ N+G+ +G I LPT SLP ASLF +N K ++R + ++
Sbjct: 211 QAFHPEKNYGWRLGYGIWAFILPT----VSLPLLASLF---LNQRKAKAAGLYREHHNLI 263
Query: 448 SLPTPD 453
+ TP+
Sbjct: 264 NHSTPE 269
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 28.7 bits (61), Expect = 2.0
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 288 YFNRYVLGYGKEFGGIVTELTNTFWSSIDVVVLQNAPWWLPI----QLSSLRINGEASSE 343
Y + ++ +G G I T T W I V V+ +A W++PI ++++++ +E
Sbjct: 466 YLSVFLAFFGMMMGTIYGWKTETPWWVIIVGVIFSAVWFIPIGIVQAITNIQLGLNVFTE 525
Query: 344 MVLARHYSPGR 354
++ Y PGR
Sbjct: 526 FIVGYMY-PGR 535
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 28.3 bits (60), Expect = 2.7
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 60 SDVENVDTQWKKLSSTLAGLFCASLNFIEDFNTITPQMALQP 101
S+ N+D +K L+S L C ++ E F Q+ L P
Sbjct: 543 SNSTNLDDDFKNLNSAANALHCGIIDITEKFQDFFTQLNLSP 584
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 27.9 bits (59), Expect = 3.5
Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 3/106 (2%)
Query: 358 KPYHLELLLRLPPKSATKITIDFEFVFLKWQEYPPDANHGFYVGSAIITANLPTARNYTS 417
K ++ +L R P I DF+ F WQ + D +HG + + +T N T
Sbjct: 630 KSFNKQLSRRNAPDINNPIA-DFQNSFQNWQSWVGDMSHGDMLSTFKLTGESSNGSNSTP 688
Query: 418 LPGTASLFESSINASKPWYPAVFRTNGVMVSLPTPDFSMPYNVICL 463
++S + P + +N SL TP+ +P V+ L
Sbjct: 689 NEAFQPFDQTSSLYNVPGLNKSYVSN--QPSLLTPETFLPDPVLNL 732
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 26.6 bits (56), Expect = 8.1
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 19 LTRFQVDELHFTLTEGQWR 37
L R +DE H LT G WR
Sbjct: 1316 LARVVIDEAHLLLTSGAWR 1334
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 26.6 bits (56), Expect = 8.1
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 265 KMTTIGAKYISKKDLVLMKLPPLYFNRYVLGYGKEFGGIVTEL 307
K+ I ++ ++ +DL +L +FN ++LG EF I+ +L
Sbjct: 842 KVAMIVSQVVNDEDLSNKELLYDFFNNHILGILAEFSNILNDL 884
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 26.6 bits (56), Expect = 8.1
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 19 LTRFQVDELHFTLTEGQWR 37
L R +DE H LT G WR
Sbjct: 1316 LARVVIDEAHLLLTSGAWR 1334
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.134 0.413
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,288,400
Number of Sequences: 5004
Number of extensions: 96480
Number of successful extensions: 220
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 207
Number of HSP's gapped (non-prelim): 13
length of query: 507
length of database: 2,362,478
effective HSP length: 76
effective length of query: 431
effective length of database: 1,982,174
effective search space: 854316994
effective search space used: 854316994
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)
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