Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002640-TA|BGIBMGA002640-PA|IPR001578|Peptidase C12,
ubiquitin carboxyl-terminal hydrolase 1
         (230 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.78 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   7.2  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 65  HKKTEENEILSKGQEVSGNIFYMKQNISNACGTIAL 100
           H+K ++  I  +    + N FY K N SN+  +  L
Sbjct: 123 HQKLDQKFIFPQENNYNDNYFYSKSNGSNSSNSDVL 158


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 4   ETLVPLESNPDVLNKFLQK 22
           E LVPLE N  + NK+  K
Sbjct: 867 EELVPLEGNLMINNKYALK 885


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 3   TETLVPLESNPDVLNKFLQKLG 24
           T+TL  L  +PD L K  Q  G
Sbjct: 889 TQTLDKLIRSPDTLRKIAQNRG 910


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.132    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,390
Number of Sequences: 429
Number of extensions: 2917
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 230
length of database: 140,377
effective HSP length: 56
effective length of query: 174
effective length of database: 116,353
effective search space: 20245422
effective search space used: 20245422
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 42 (21.0 bits)